Table 1.
Mitochondrial DNA (mtDNA) cytochrome b (cyt b) sequence divergence, nucleotide and haplotype diversity values between and within lineages/haplogroups as identified by MINSPNET, TCS and phylogenetic analyses, within Micaelamys namaquensis from southern Africa.
| GROUPS/LINEAGES | UNCORRECTED P-DISTANCE WITHIN LINEAGE DIVERGENCE | UNCORRECTED P-DISTANCE BETWEEN LINEAGE DIVERGENCE | HAPLOTYPE DIVERSITY | PERCENTAGE NUCLEOTIDE DIVERSITY |
|---|---|---|---|---|
| Lineage A1 | - | 0.84 - 3.69% | - | - |
| Lineage A2 | 0.16 - 2.81% | 1.15 - 6.15% | 0.97 | 1.44 |
| Lineage A3 | 0.17 - 1.21% | 0.84 - 5.18% | 1.00 | 0.62 |
| Lineage A4 | 0.18 - 1.22% | 0.88 - 5.03% | 0.79 | 0.46 |
| Lineage A5 | 0.35 - 1.58% | 1.34 - 5.85% | 0.83 | 0.89 |
| Lineage A1-A5 | 0.16 - 4.46% | 1.62 - 6.15% | 0.98 | 2.11 |
| Lineage B1 | - | 1.18 - 4.26% | - | - |
| Lineage B2 | 0.16 - 0.97% | 1.18 - 5.63% | 0.80 | 0.56 |
| Lineage B3 | 0.16 - 3.31% | 2.48 - 7.74% | 0.90 | 0.73 |
| Lineage B1-B3 | 0.16 - 4.63% | 1.62 - 7.74% | 0.94 | 1.68 |
| Lineage C | 0.16 - 2.06% | 2.35 - 6.35% | 0.55 | 0.57 |
| Lineage D | 0.16 - 1.81% | 2.47 - 7.74% | 0.81 | 0.37 |
| Lineage E | 0.16 - 2.96% | 2.19 - 6.63% | 0.86 | 0.99 |
| Lineage F | 0.65% | 1.99 - 5.29% | 0.67 | 0.45 |
| Lineage G | 0.16 - 1.17% | 2.04 - 6.61% | 0.69 | 0.35 |
| Lineage H | 0.16 - 2.10% | 3.01 - 6.47% | 0.93 | 0.63 |
Lineage letter codes as defined in this table are used in all other Figures, Tables and Additional files.