Abstract
The molecule of the title dicarbonyl compound, C13H20O6, possesses approximate local twofold symmetry. In the crystal, intermolecular C—H⋯O hydrogen bonds link the molecules, generating a chain structure.
Related literature
For general background, see: Kim et al. (2001 ▶); Chetia et al. (2004 ▶); Ranu & Banerjee (2005 ▶); Wang et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶).
Experimental
Crystal data
C13H20O6
M r = 272.29
Monoclinic,
a = 11.402 (2) Å
b = 8.6910 (17) Å
c = 14.845 (3) Å
β = 107.35 (3)°
V = 1404.1 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 293 (2) K
0.30 × 0.20 × 0.10 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.970, T max = 0.990
2531 measured reflections
2531 independent reflections
1783 reflections with I > 2σ(I)
3 standard reflections every 200 reflections intensity decay: 9%
Refinement
R[F 2 > 2σ(F 2)] = 0.065
wR(F 2) = 0.202
S = 1.01
2531 reflections
172 parameters
H-atom parameters constrained
Δρmax = 0.38 e Å−3
Δρmin = −0.25 e Å−3
Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808043705/sj2570sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043705/sj2570Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C4—H4B⋯O5i | 0.97 | 2.58 | 3.418 (4) | 145 |
| C3—H3B⋯O2ii | 0.97 | 2.55 | 3.500 (4) | 165 |
Symmetry codes: (i)
; (ii)
.
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University, for support.
supplementary crystallographic information
Comment
Dicarbonyl compounds represent an important class of starting materials used to increase the carbon number of organic compounds (Kim et al., 2001). Some dicarbonyl compounds are useful for the synthesis of enantiomerically pure alcohols (Chetia et al., 2004). Many dicarbonyl compounds have been synthesized with Michael Addition method using diethyl malonate as the starting mateiral, but only a few Michael Addition diadducts have been synthesized under normal condition (Ranu & Banerjee, 2005; Wang et al., 2008). We are focusing our synthetic and structural studies on new products of Michael Addition diadducts from dicarbonyl compounds. We report here the crystal structure of the title dicarbonyl compound (I), Fig 1.
All bond lengths in the compound are within normal ranges (Allen et al., 1987). The central C13 atom lies on a lies on a non-crystallographic pseudo twofold rotation axis. Intermolecular C—H···O hydrogen bond (Table 1, Fig.2) help to establish the one-dimensional supramolecular structure.
Experimental
Acetylacetone (50 mmol), anhydrous potassium carbonate (100 mmol), tetrabutylammonium bromide (1 g) were dissolved in toluene (20 ml) and methyl acrylate (100 mmol) was slowly dropped to the mixture which was stirred for 24 h at 303–333 K, then 100 ml water was added. The organic layer was dried with magnesium sulfate and the solvent removed under vacuum to obtain the crude product, (I). Crystals suitable for X-ray diffraction were obtained by slow evaporation of an ethyl acetate solution. 1H NMR (CDCl3, δ, p.p.m.) 3.62(s, 6H), 2.23(m, 4H), 2.144 (m, 10H).
Refinement
All H atoms were positioned geometrically, with C—H = 0.96 and 0.97 Å for methyl and methylene H atoms, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C), where x= 1.5 for methyl H and x = 1.2 for methylene H atoms.
Figures
Fig. 1.
A view of the molecular structure of (I) showing the atom-numbering scheme and 30% displacement ellipsoids.
Fig. 2.
The crystal packing of (I) Intermolecular hydrogen bonds are shown as dashed lines.
Crystal data
| C13H20O6 | F(000) = 584 |
| Mr = 272.29 | Dx = 1.288 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 27 reflections |
| a = 11.402 (2) Å | θ = 8–15° |
| b = 8.6910 (17) Å | µ = 0.10 mm−1 |
| c = 14.845 (3) Å | T = 293 K |
| β = 107.35 (3)° | Block, colourless |
| V = 1404.1 (5) Å3 | 0.30 × 0.20 × 0.10 mm |
| Z = 4 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 1783 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.0000 |
| graphite | θmax = 25.3°, θmin = 1.9° |
| ω/2θ scans | h = −13→13 |
| Absorption correction: ψ scan (North et al., 1968) | k = 0→10 |
| Tmin = 0.970, Tmax = 0.990 | l = 0→17 |
| 2531 measured reflections | 3 standard reflections every 200 reflections |
| 2531 independent reflections | intensity decay: 9% |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.065 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.202 | H-atom parameters constrained |
| S = 1.00 | w = 1/[σ2(Fo2) + (0.1P)2 + 1.5P] where P = (Fo2 + 2Fc2)/3 |
| 2531 reflections | (Δ/σ)max = 0.001 |
| 172 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 1.1970 (2) | −0.2798 (3) | 0.80271 (19) | 0.0587 (7) | |
| O2 | 1.1274 (2) | −0.0419 (2) | 0.80976 (18) | 0.0552 (7) | |
| O3 | 0.5191 (2) | −0.3553 (3) | 0.66776 (18) | 0.0646 (7) | |
| O4 | 0.5065 (2) | −0.1212 (3) | 0.60519 (17) | 0.0585 (7) | |
| O5 | 0.7976 (2) | 0.0496 (2) | 0.94983 (17) | 0.0506 (6) | |
| O6 | 0.8453 (2) | −0.4676 (2) | 0.96422 (18) | 0.0567 (7) | |
| C1 | 1.2919 (4) | −0.2184 (5) | 0.7683 (3) | 0.0710 (12) | |
| H1A | 1.3430 | −0.3006 | 0.7586 | 0.106* | |
| H1B | 1.3407 | −0.1472 | 0.8136 | 0.106* | |
| H1C | 1.2556 | −0.1660 | 0.7097 | 0.106* | |
| C2 | 1.1177 (3) | −0.1782 (3) | 0.8194 (2) | 0.0401 (7) | |
| C3 | 1.0191 (3) | −0.2557 (3) | 0.8502 (2) | 0.0408 (7) | |
| H3A | 1.0564 | −0.3225 | 0.9033 | 0.049* | |
| H3B | 0.9697 | −0.3190 | 0.7991 | 0.049* | |
| C4 | 0.9365 (2) | −0.1393 (3) | 0.8785 (2) | 0.0360 (7) | |
| H4A | 0.9057 | −0.0673 | 0.8269 | 0.043* | |
| H4B | 0.9858 | −0.0814 | 0.9324 | 0.043* | |
| C5 | 0.4002 (3) | −0.1660 (5) | 0.5299 (3) | 0.0597 (10) | |
| H5A | 0.3724 | −0.0805 | 0.4881 | 0.089* | |
| H5B | 0.3361 | −0.1974 | 0.5557 | 0.089* | |
| H5C | 0.4211 | −0.2501 | 0.4957 | 0.089* | |
| C6 | 0.5572 (3) | −0.2265 (4) | 0.6703 (2) | 0.0430 (7) | |
| C7 | 0.6632 (3) | −0.1613 (4) | 0.7454 (2) | 0.0513 (8) | |
| H7A | 0.6340 | −0.0785 | 0.7769 | 0.062* | |
| H7B | 0.7214 | −0.1179 | 0.7163 | 0.062* | |
| C8 | 0.7290 (3) | −0.2793 (3) | 0.8186 (2) | 0.0413 (7) | |
| H8A | 0.7683 | −0.3542 | 0.7887 | 0.050* | |
| H8B | 0.6686 | −0.3333 | 0.8410 | 0.050* | |
| C9 | 0.6618 (3) | −0.1291 (4) | 0.9838 (3) | 0.0582 (9) | |
| H9A | 0.6315 | −0.0401 | 1.0081 | 0.087* | |
| H9B | 0.6907 | −0.2033 | 1.0334 | 0.087* | |
| H9C | 0.5967 | −0.1734 | 0.9338 | 0.087* | |
| C10 | 0.7649 (3) | −0.0831 (4) | 0.9467 (2) | 0.0393 (7) | |
| C11 | 0.9581 (3) | −0.2844 (4) | 1.0738 (2) | 0.0539 (9) | |
| H11A | 0.9808 | −0.3720 | 1.1146 | 0.081* | |
| H11B | 0.9172 | −0.2102 | 1.1018 | 0.081* | |
| H11C | 1.0305 | −0.2389 | 1.0648 | 0.081* | |
| C12 | 0.8733 (3) | −0.3344 (3) | 0.9802 (2) | 0.0394 (7) | |
| C13 | 0.8265 (2) | −0.2094 (3) | 0.9038 (2) | 0.0341 (6) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0587 (14) | 0.0424 (13) | 0.0902 (18) | 0.0057 (11) | 0.0453 (14) | 0.0031 (12) |
| O2 | 0.0663 (15) | 0.0377 (13) | 0.0743 (16) | −0.0010 (11) | 0.0403 (13) | 0.0039 (11) |
| O3 | 0.0630 (16) | 0.0488 (15) | 0.0686 (16) | −0.0126 (12) | −0.0008 (13) | 0.0054 (12) |
| O4 | 0.0587 (15) | 0.0523 (14) | 0.0544 (14) | −0.0080 (11) | 0.0015 (11) | 0.0059 (11) |
| O5 | 0.0508 (13) | 0.0329 (12) | 0.0712 (16) | 0.0012 (10) | 0.0228 (11) | −0.0047 (10) |
| O6 | 0.0595 (15) | 0.0344 (13) | 0.0714 (16) | −0.0049 (10) | 0.0123 (12) | 0.0102 (11) |
| C1 | 0.065 (2) | 0.063 (2) | 0.105 (3) | −0.0007 (19) | 0.055 (2) | −0.006 (2) |
| C2 | 0.0444 (17) | 0.0383 (17) | 0.0393 (16) | −0.0001 (13) | 0.0149 (13) | −0.0041 (12) |
| C3 | 0.0439 (16) | 0.0348 (15) | 0.0472 (17) | 0.0000 (13) | 0.0188 (13) | 0.0000 (12) |
| C4 | 0.0335 (15) | 0.0300 (14) | 0.0444 (16) | −0.0032 (12) | 0.0114 (12) | −0.0044 (12) |
| C5 | 0.0441 (19) | 0.075 (3) | 0.053 (2) | 0.0015 (18) | 0.0036 (16) | 0.0057 (18) |
| C6 | 0.0394 (16) | 0.0485 (19) | 0.0436 (17) | −0.0009 (14) | 0.0163 (14) | −0.0008 (14) |
| C7 | 0.0530 (19) | 0.0474 (19) | 0.0449 (17) | −0.0104 (15) | 0.0013 (15) | 0.0036 (15) |
| C8 | 0.0409 (16) | 0.0355 (16) | 0.0468 (17) | −0.0046 (13) | 0.0122 (14) | −0.0004 (13) |
| C9 | 0.050 (2) | 0.060 (2) | 0.075 (2) | 0.0021 (17) | 0.0360 (18) | 0.0016 (18) |
| C10 | 0.0316 (15) | 0.0415 (17) | 0.0423 (16) | 0.0022 (13) | 0.0072 (12) | −0.0005 (13) |
| C11 | 0.065 (2) | 0.0460 (19) | 0.0474 (19) | 0.0052 (16) | 0.0111 (16) | 0.0047 (15) |
| C12 | 0.0385 (15) | 0.0337 (16) | 0.0499 (17) | 0.0005 (12) | 0.0191 (13) | 0.0033 (13) |
| C13 | 0.0322 (14) | 0.0293 (14) | 0.0408 (15) | −0.0007 (11) | 0.0108 (12) | −0.0010 (11) |
Geometric parameters (Å, °)
| O1—C2 | 1.339 (4) | C5—H5B | 0.9600 |
| O1—C1 | 1.430 (4) | C5—H5C | 0.9600 |
| O2—C2 | 1.202 (4) | C6—C7 | 1.491 (4) |
| O3—C6 | 1.197 (4) | C7—C8 | 1.519 (4) |
| O4—C6 | 1.331 (4) | C7—H7A | 0.9700 |
| O4—C5 | 1.436 (4) | C7—H7B | 0.9700 |
| O5—C10 | 1.209 (4) | C8—C13 | 1.538 (4) |
| O6—C12 | 1.206 (4) | C8—H8A | 0.9700 |
| C1—H1A | 0.9600 | C8—H8B | 0.9700 |
| C1—H1B | 0.9600 | C9—C10 | 1.494 (4) |
| C1—H1C | 0.9600 | C9—H9A | 0.9600 |
| C2—C3 | 1.495 (4) | C9—H9B | 0.9600 |
| C3—C4 | 1.524 (4) | C9—H9C | 0.9600 |
| C3—H3A | 0.9700 | C10—C13 | 1.540 (4) |
| C3—H3B | 0.9700 | C11—C12 | 1.501 (5) |
| C4—C13 | 1.539 (4) | C11—H11A | 0.9600 |
| C4—H4A | 0.9700 | C11—H11B | 0.9600 |
| C4—H4B | 0.9700 | C11—H11C | 0.9600 |
| C5—H5A | 0.9600 | C12—C13 | 1.546 (4) |
| C2—O1—C1 | 116.4 (3) | C8—C7—H7A | 108.9 |
| C6—O4—C5 | 117.5 (3) | C6—C7—H7B | 108.9 |
| O1—C1—H1A | 109.5 | C8—C7—H7B | 108.9 |
| O1—C1—H1B | 109.5 | H7A—C7—H7B | 107.7 |
| H1A—C1—H1B | 109.5 | C7—C8—C13 | 113.8 (2) |
| O1—C1—H1C | 109.5 | C7—C8—H8A | 108.8 |
| H1A—C1—H1C | 109.5 | C13—C8—H8A | 108.8 |
| H1B—C1—H1C | 109.5 | C7—C8—H8B | 108.8 |
| O2—C2—O1 | 122.5 (3) | C13—C8—H8B | 108.8 |
| O2—C2—C3 | 125.8 (3) | H8A—C8—H8B | 107.7 |
| O1—C2—C3 | 111.8 (3) | C10—C9—H9A | 109.5 |
| C2—C3—C4 | 111.6 (2) | C10—C9—H9B | 109.5 |
| C2—C3—H3A | 109.3 | H9A—C9—H9B | 109.5 |
| C4—C3—H3A | 109.3 | C10—C9—H9C | 109.5 |
| C2—C3—H3B | 109.3 | H9A—C9—H9C | 109.5 |
| C4—C3—H3B | 109.3 | H9B—C9—H9C | 109.5 |
| H3A—C3—H3B | 108.0 | O5—C10—C9 | 120.6 (3) |
| C3—C4—C13 | 114.8 (2) | O5—C10—C13 | 121.5 (3) |
| C3—C4—H4A | 108.6 | C9—C10—C13 | 117.9 (3) |
| C13—C4—H4A | 108.6 | C12—C11—H11A | 109.5 |
| C3—C4—H4B | 108.6 | C12—C11—H11B | 109.5 |
| C13—C4—H4B | 108.6 | H11A—C11—H11B | 109.5 |
| H4A—C4—H4B | 107.5 | C12—C11—H11C | 109.5 |
| O4—C5—H5A | 109.5 | H11A—C11—H11C | 109.5 |
| O4—C5—H5B | 109.5 | H11B—C11—H11C | 109.5 |
| H5A—C5—H5B | 109.5 | O6—C12—C11 | 121.3 (3) |
| O4—C5—H5C | 109.5 | O6—C12—C13 | 121.1 (3) |
| H5A—C5—H5C | 109.5 | C11—C12—C13 | 117.5 (3) |
| H5B—C5—H5C | 109.5 | C8—C13—C4 | 113.4 (2) |
| O3—C6—O4 | 123.0 (3) | C8—C13—C10 | 108.4 (2) |
| O3—C6—C7 | 125.7 (3) | C4—C13—C10 | 108.9 (2) |
| O4—C6—C7 | 111.2 (3) | C8—C13—C12 | 109.4 (2) |
| C6—C7—C8 | 113.3 (3) | C4—C13—C12 | 109.2 (2) |
| C6—C7—H7A | 108.9 | C10—C13—C12 | 107.3 (2) |
| C1—O1—C2—O2 | −2.7 (5) | C3—C4—C13—C10 | 170.5 (2) |
| C1—O1—C2—C3 | 177.0 (3) | C3—C4—C13—C12 | 53.6 (3) |
| O2—C2—C3—C4 | −5.9 (4) | O5—C10—C13—C8 | −118.2 (3) |
| O1—C2—C3—C4 | 174.3 (3) | C9—C10—C13—C8 | 61.1 (3) |
| C2—C3—C4—C13 | 175.5 (2) | O5—C10—C13—C4 | 5.6 (4) |
| C5—O4—C6—O3 | 0.9 (5) | C9—C10—C13—C4 | −175.1 (3) |
| C5—O4—C6—C7 | −177.8 (3) | O5—C10—C13—C12 | 123.7 (3) |
| O3—C6—C7—C8 | 4.6 (5) | C9—C10—C13—C12 | −57.0 (3) |
| O4—C6—C7—C8 | −176.7 (3) | O6—C12—C13—C8 | 9.0 (4) |
| C6—C7—C8—C13 | −171.8 (3) | C11—C12—C13—C8 | −172.9 (3) |
| C7—C8—C13—C4 | −66.3 (3) | O6—C12—C13—C4 | −115.7 (3) |
| C7—C8—C13—C10 | 54.8 (3) | C11—C12—C13—C4 | 62.4 (3) |
| C7—C8—C13—C12 | 171.5 (3) | O6—C12—C13—C10 | 126.4 (3) |
| C3—C4—C13—C8 | −68.8 (3) | C11—C12—C13—C10 | −55.5 (3) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C4—H4B···O5i | 0.97 | 2.58 | 3.418 (4) | 145 |
| C3—H3B···O2ii | 0.97 | 2.55 | 3.500 (4) | 165 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+2, y−1/2, −z+3/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: SJ2570).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808043705/sj2570sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043705/sj2570Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


