Abstract
In the title compound, C16H20O5, the dihedral angle between the planar rings, viz. benzene and cyclopropane, is 52.1 (2)°. Molecules are connected in the crystal via weak intermolecular C—H⋯O hydrogen bonds, forming chains in the [001] direction.
Related literature
For details of the synthesis, see: Chen (2008 ▶).
Experimental
Crystal data
C16H20O5
M r = 292.32
Monoclinic,
a = 12.663 (3) Å
b = 8.5020 (17) Å
c = 14.676 (3) Å
β = 107.25 (3)°
V = 1509.0 (5) Å3
Z = 4
Mo Kα radiation
μ = 0.10 mm−1
T = 298 (2) K
0.20 × 0.10 × 0.10 mm
Data collection
Enraf–Nonius CAD-4 diffractometer
Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.981, T max = 0.991
2874 measured reflections
2732 independent reflections
1473 reflections with I > 2σ(I)
R int = 0.039
3 standard reflections every 200 reflections intensity decay: 1%
Refinement
R[F 2 > 2σ(F 2)] = 0.062
wR(F 2) = 0.168
S = 0.93
2732 reflections
193 parameters
H-atom parameters constrained
Δρmax = 0.22 e Å−3
Δρmin = −0.20 e Å−3
Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL.
Supplementary Material
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809000956/bh2213sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000956/bh2213Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| C7—H7A⋯O1i | 0.93 | 2.56 | 3.329 (4) | 140 |
Symmetry code: (i)
.
Acknowledgments
The authors thank the Center of Testing and Analysis, Nanjing University, for support.
supplementary crystallographic information
Comment
The title compound, (I), is one of the most important intermediates in the synthesis of 7-[(1-aminocyclopropyl)methoxy]-N-(1H-indol-5-yl)-6-methoxyquinolin-4-amine, which has advantageous pharmacological properties and inhibits the activity of protein tyrosine kinases (Chen, 2008). We report here the crystal structure of (I).
All bond lengths and angles are within expected ranges. Both benzene and cyclopropane rings are planar, and make a dihedral angle of 52.1 (2)° (rings C3···C8 and C11···C13). Molecules are linked together via intermolecular C—H···O hydrogen bonds, which may be effective to the stabilization of the crystal structure.
Experimental
The title compound was synthesized using a method similar to that reported recently (Chen, 2008). The crystals were obtained by evaporating the acetone slowly at room temperature for about 14 d.
Refinement
H atoms were positioned geometrically, with C—H = 0.93 (aromatic), 0.96 (methyl) or 0.97 Å (methylene), and constrained to ride on their parent atoms, with Uiso(H) = xUeq(carrier C), where x = 1.5 for methyl groups and x = 1.2 otherwise. Methyl groups were allowed to rotate about their C—C bonds.
Figures
Fig. 1.
A drawing of the molecular structure of (I), with the atom-numbering scheme. Displacement ellipsoids are drawn at the 40% probability level. Intramolecular C—H···O hydrogen bond is shown as a dashed line.
Fig. 2.
A packing diagram for (I). C—H···O hydrogen bonds are shown as dashed lines.
Crystal data
| C16H20O5 | F(000) = 624 |
| Mr = 292.32 | Dx = 1.287 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| a = 12.663 (3) Å | θ = 9–13° |
| b = 8.5020 (17) Å | µ = 0.10 mm−1 |
| c = 14.676 (3) Å | T = 298 K |
| β = 107.25 (3)° | Plate, colorless |
| V = 1509.0 (5) Å3 | 0.20 × 0.10 × 0.10 mm |
| Z = 4 |
Data collection
| Enraf–Nonius CAD-4 diffractometer | 1473 reflections with I > 2σ(I) |
| Radiation source: fine-focus sealed tube | Rint = 0.039 |
| graphite | θmax = 25.3°, θmin = 1.7° |
| ω/2θ scans | h = 0→14 |
| Absorption correction: ψ scan (North et al., 1968) | k = 0→10 |
| Tmin = 0.981, Tmax = 0.991 | l = −17→17 |
| 2874 measured reflections | 3 standard reflections every 200 reflections |
| 2732 independent reflections | intensity decay: 1% |
Refinement
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.168 | H-atom parameters constrained |
| S = 0.93 | w = 1/[σ2(Fo2) + (0.06P)2 + 1.15P] where P = (Fo2 + 2Fc2)/3 |
| 2732 reflections | (Δ/σ)max < 0.001 |
| 193 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| 0 constraints |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.5800 (2) | 0.2003 (4) | 0.7367 (2) | 0.0809 (10) | |
| C1 | 0.7006 (3) | 0.3398 (5) | 0.6698 (3) | 0.0673 (13) | |
| H1A | 0.7445 | 0.3495 | 0.7353 | 0.101* | |
| H1B | 0.6823 | 0.4426 | 0.6428 | 0.101* | |
| H1C | 0.7418 | 0.2838 | 0.6348 | 0.101* | |
| O2 | 0.26250 (19) | −0.0087 (3) | 0.46428 (15) | 0.0472 (6) | |
| C2 | 0.5977 (3) | 0.2525 (5) | 0.6646 (3) | 0.0522 (10) | |
| O3 | 0.27923 (17) | 0.1243 (3) | 0.31287 (15) | 0.0431 (6) | |
| C3 | 0.5143 (3) | 0.2248 (4) | 0.5700 (2) | 0.0403 (8) | |
| O4 | 0.1020 (2) | 0.3513 (3) | 0.20147 (19) | 0.0602 (8) | |
| C4 | 0.4262 (3) | 0.1219 (4) | 0.5639 (2) | 0.0417 (9) | |
| H4A | 0.4197 | 0.0740 | 0.6189 | 0.050* | |
| C5 | 0.3492 (3) | 0.0907 (4) | 0.4776 (2) | 0.0360 (8) | |
| O5 | −0.0032 (2) | 0.2019 (4) | 0.0853 (2) | 0.0883 (11) | |
| C6 | 0.3593 (3) | 0.1627 (4) | 0.3945 (2) | 0.0375 (8) | |
| C7 | 0.4462 (3) | 0.2622 (4) | 0.3995 (2) | 0.0415 (9) | |
| H7A | 0.4534 | 0.3086 | 0.3442 | 0.050* | |
| C8 | 0.5237 (3) | 0.2938 (4) | 0.4871 (3) | 0.0464 (9) | |
| H8A | 0.5823 | 0.3616 | 0.4901 | 0.056* | |
| C9 | 0.2450 (3) | −0.0810 (5) | 0.5458 (3) | 0.0565 (11) | |
| H9A | 0.1861 | −0.1562 | 0.5259 | 0.085* | |
| H9B | 0.2256 | −0.0022 | 0.5849 | 0.085* | |
| H9C | 0.3115 | −0.1334 | 0.5817 | 0.085* | |
| C10 | 0.2902 (3) | 0.1857 (4) | 0.2248 (2) | 0.0413 (9) | |
| H10A | 0.3545 | 0.1404 | 0.2118 | 0.050* | |
| H10B | 0.2994 | 0.2990 | 0.2292 | 0.050* | |
| C11 | 0.1888 (3) | 0.1450 (4) | 0.1471 (2) | 0.0414 (8) | |
| C12 | 0.1746 (3) | −0.0231 (5) | 0.1132 (3) | 0.0567 (11) | |
| H12A | 0.2312 | −0.0979 | 0.1453 | 0.068* | |
| H12B | 0.1001 | −0.0653 | 0.0930 | 0.068* | |
| C13 | 0.2038 (3) | 0.0959 (5) | 0.0513 (2) | 0.0590 (11) | |
| H13A | 0.1471 | 0.1268 | −0.0064 | 0.071* | |
| H13B | 0.2784 | 0.0942 | 0.0461 | 0.071* | |
| C14 | 0.0850 (3) | 0.2319 (5) | 0.1393 (3) | 0.0497 (10) | |
| C15 | 0.0056 (4) | 0.4466 (6) | 0.2022 (3) | 0.0750 (14) | |
| H15A | −0.0610 | 0.3843 | 0.1777 | 0.090* | |
| H15B | 0.0113 | 0.4756 | 0.2675 | 0.090* | |
| C16 | −0.0033 (4) | 0.5888 (6) | 0.1448 (4) | 0.0806 (14) | |
| H16A | −0.0661 | 0.6490 | 0.1485 | 0.121* | |
| H16B | −0.0123 | 0.5605 | 0.0797 | 0.121* | |
| H16C | 0.0626 | 0.6506 | 0.1687 | 0.121* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0617 (18) | 0.131 (3) | 0.0465 (16) | 0.0004 (19) | 0.0099 (14) | −0.0115 (18) |
| C1 | 0.052 (2) | 0.071 (3) | 0.068 (3) | −0.009 (2) | 0.001 (2) | −0.023 (2) |
| O2 | 0.0434 (13) | 0.0557 (16) | 0.0413 (13) | −0.0115 (13) | 0.0106 (10) | 0.0021 (12) |
| C2 | 0.048 (2) | 0.057 (3) | 0.045 (2) | 0.007 (2) | 0.0029 (18) | −0.015 (2) |
| O3 | 0.0417 (13) | 0.0481 (15) | 0.0364 (12) | −0.0089 (12) | 0.0065 (10) | 0.0034 (12) |
| C3 | 0.0379 (19) | 0.043 (2) | 0.0363 (18) | 0.0070 (17) | 0.0048 (15) | −0.0084 (17) |
| O4 | 0.0503 (15) | 0.0526 (17) | 0.0738 (18) | 0.0038 (14) | 0.0125 (13) | −0.0084 (15) |
| C4 | 0.0370 (18) | 0.046 (2) | 0.042 (2) | 0.0080 (17) | 0.0112 (15) | −0.0006 (17) |
| C5 | 0.0375 (18) | 0.0311 (18) | 0.0394 (18) | 0.0050 (16) | 0.0113 (15) | −0.0037 (15) |
| O5 | 0.0523 (18) | 0.089 (2) | 0.101 (2) | 0.0043 (17) | −0.0115 (17) | −0.026 (2) |
| C6 | 0.0354 (18) | 0.036 (2) | 0.0351 (18) | −0.0015 (16) | 0.0019 (14) | −0.0046 (15) |
| C7 | 0.045 (2) | 0.035 (2) | 0.044 (2) | 0.0015 (17) | 0.0112 (16) | 0.0007 (17) |
| C8 | 0.041 (2) | 0.035 (2) | 0.058 (2) | −0.0016 (17) | 0.0063 (17) | −0.0061 (18) |
| C9 | 0.058 (2) | 0.061 (3) | 0.057 (2) | −0.006 (2) | 0.0264 (19) | 0.010 (2) |
| C10 | 0.045 (2) | 0.041 (2) | 0.0385 (19) | −0.0018 (17) | 0.0129 (15) | 0.0033 (16) |
| C11 | 0.050 (2) | 0.037 (2) | 0.0351 (18) | −0.0027 (17) | 0.0087 (15) | 0.0003 (16) |
| C12 | 0.066 (3) | 0.043 (2) | 0.056 (2) | −0.002 (2) | 0.0093 (19) | −0.0094 (19) |
| C13 | 0.071 (3) | 0.066 (3) | 0.037 (2) | −0.005 (2) | 0.0111 (18) | −0.005 (2) |
| C14 | 0.042 (2) | 0.051 (2) | 0.047 (2) | −0.0062 (19) | 0.0001 (18) | 0.005 (2) |
| C15 | 0.061 (3) | 0.069 (3) | 0.102 (4) | 0.020 (2) | 0.034 (3) | 0.010 (3) |
| C16 | 0.060 (3) | 0.071 (3) | 0.112 (4) | 0.007 (3) | 0.026 (3) | 0.002 (3) |
Geometric parameters (Å, °)
| O1—C2 | 1.227 (4) | C8—H8A | 0.9300 |
| C1—C2 | 1.482 (5) | C9—H9A | 0.9600 |
| C1—H1A | 0.9600 | C9—H9B | 0.9600 |
| C1—H1B | 0.9600 | C9—H9C | 0.9600 |
| C1—H1C | 0.9600 | C10—C11 | 1.483 (4) |
| O2—C5 | 1.352 (4) | C10—H10A | 0.9700 |
| O2—C9 | 1.419 (4) | C10—H10B | 0.9700 |
| C2—C3 | 1.493 (5) | C11—C14 | 1.482 (5) |
| O3—C6 | 1.360 (3) | C11—C12 | 1.506 (5) |
| O3—C10 | 1.438 (4) | C11—C13 | 1.532 (5) |
| C3—C8 | 1.387 (5) | C12—C13 | 1.478 (5) |
| C3—C4 | 1.399 (5) | C12—H12A | 0.9700 |
| O4—C14 | 1.339 (4) | C12—H12B | 0.9700 |
| O4—C15 | 1.468 (4) | C13—H13A | 0.9700 |
| C4—C5 | 1.376 (4) | C13—H13B | 0.9700 |
| C4—H4A | 0.9300 | C15—C16 | 1.459 (6) |
| C5—C6 | 1.405 (5) | C15—H15A | 0.9700 |
| O5—C14 | 1.189 (4) | C15—H15B | 0.9700 |
| C6—C7 | 1.373 (4) | C16—H16A | 0.9600 |
| C7—C8 | 1.393 (5) | C16—H16B | 0.9600 |
| C7—H7A | 0.9300 | C16—H16C | 0.9600 |
| C2—C1—H1A | 109.5 | C11—C10—H10A | 110.0 |
| C2—C1—H1B | 109.5 | O3—C10—H10B | 110.0 |
| H1A—C1—H1B | 109.5 | C11—C10—H10B | 110.0 |
| C2—C1—H1C | 109.5 | H10A—C10—H10B | 108.4 |
| H1A—C1—H1C | 109.5 | C14—C11—C10 | 119.3 (3) |
| H1B—C1—H1C | 109.5 | C14—C11—C12 | 115.5 (3) |
| C5—O2—C9 | 118.1 (3) | C10—C11—C12 | 117.9 (3) |
| O1—C2—C1 | 121.3 (3) | C14—C11—C13 | 114.4 (3) |
| O1—C2—C3 | 119.0 (4) | C10—C11—C13 | 117.0 (3) |
| C1—C2—C3 | 119.7 (4) | C12—C11—C13 | 58.2 (2) |
| C6—O3—C10 | 117.3 (2) | C13—C12—C11 | 61.7 (2) |
| C8—C3—C4 | 118.9 (3) | C13—C12—H12A | 117.6 |
| C8—C3—C2 | 121.8 (3) | C11—C12—H12A | 117.6 |
| C4—C3—C2 | 119.3 (3) | C13—C12—H12B | 117.6 |
| C14—O4—C15 | 117.2 (3) | C11—C12—H12B | 117.6 |
| C5—C4—C3 | 120.9 (3) | H12A—C12—H12B | 114.7 |
| C5—C4—H4A | 119.5 | C12—C13—C11 | 60.0 (2) |
| C3—C4—H4A | 119.5 | C12—C13—H13A | 117.8 |
| O2—C5—C4 | 125.3 (3) | C11—C13—H13A | 117.8 |
| O2—C5—C6 | 115.2 (3) | C12—C13—H13B | 117.8 |
| C4—C5—C6 | 119.5 (3) | C11—C13—H13B | 117.8 |
| O3—C6—C7 | 124.9 (3) | H13A—C13—H13B | 114.9 |
| O3—C6—C5 | 115.1 (3) | O5—C14—O4 | 123.1 (4) |
| C7—C6—C5 | 120.0 (3) | O5—C14—C11 | 125.5 (4) |
| C6—C7—C8 | 120.1 (3) | O4—C14—C11 | 111.4 (3) |
| C6—C7—H7A | 119.9 | C16—C15—O4 | 112.0 (4) |
| C8—C7—H7A | 119.9 | C16—C15—H15A | 109.2 |
| C3—C8—C7 | 120.5 (3) | O4—C15—H15A | 109.2 |
| C3—C8—H8A | 119.7 | C16—C15—H15B | 109.2 |
| C7—C8—H8A | 119.7 | O4—C15—H15B | 109.2 |
| O2—C9—H9A | 109.5 | H15A—C15—H15B | 107.9 |
| O2—C9—H9B | 109.5 | C15—C16—H16A | 109.5 |
| H9A—C9—H9B | 109.5 | C15—C16—H16B | 109.5 |
| O2—C9—H9C | 109.5 | H16A—C16—H16B | 109.5 |
| H9A—C9—H9C | 109.5 | C15—C16—H16C | 109.5 |
| H9B—C9—H9C | 109.5 | H16A—C16—H16C | 109.5 |
| O3—C10—C11 | 108.3 (3) | H16B—C16—H16C | 109.5 |
| O3—C10—H10A | 110.0 | ||
| O1—C2—C3—C8 | 173.4 (4) | C2—C3—C8—C7 | 178.2 (3) |
| C1—C2—C3—C8 | −7.6 (5) | C6—C7—C8—C3 | 0.3 (5) |
| O1—C2—C3—C4 | −9.0 (5) | C6—O3—C10—C11 | −173.7 (3) |
| C1—C2—C3—C4 | 170.0 (3) | O3—C10—C11—C14 | 74.4 (4) |
| C8—C3—C4—C5 | −0.8 (5) | O3—C10—C11—C12 | −74.2 (4) |
| C2—C3—C4—C5 | −178.5 (3) | O3—C10—C11—C13 | −140.7 (3) |
| C9—O2—C5—C4 | 3.6 (5) | C14—C11—C12—C13 | 104.1 (4) |
| C9—O2—C5—C6 | −177.7 (3) | C10—C11—C12—C13 | −106.1 (4) |
| C3—C4—C5—O2 | 178.9 (3) | C14—C11—C13—C12 | −106.0 (4) |
| C3—C4—C5—C6 | 0.2 (5) | C10—C11—C13—C12 | 107.5 (4) |
| C10—O3—C6—C7 | 3.6 (5) | C15—O4—C14—O5 | 0.7 (6) |
| C10—O3—C6—C5 | −175.5 (3) | C15—O4—C14—C11 | −179.3 (3) |
| O2—C5—C6—O3 | 1.2 (4) | C10—C11—C14—O5 | −173.6 (4) |
| C4—C5—C6—O3 | 179.9 (3) | C12—C11—C14—O5 | −24.2 (6) |
| O2—C5—C6—C7 | −178.1 (3) | C13—C11—C14—O5 | 40.7 (5) |
| C4—C5—C6—C7 | 0.7 (5) | C10—C11—C14—O4 | 6.4 (5) |
| O3—C6—C7—C8 | 179.9 (3) | C12—C11—C14—O4 | 155.8 (3) |
| C5—C6—C7—C8 | −1.0 (5) | C13—C11—C14—O4 | −139.3 (3) |
| C4—C3—C8—C7 | 0.6 (5) | C14—O4—C15—C16 | −96.6 (4) |
Hydrogen-bond geometry (Å, °)
| D—H···A | D—H | H···A | D···A | D—H···A |
| C7—H7A···O1i | 0.93 | 2.56 | 3.329 (4) | 140 |
| C15—H15A···O5 | 0.97 | 2.32 | 2.678 (6) | 101 |
Symmetry codes: (i) x, −y+1/2, z−1/2.
Footnotes
Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: BH2213).
References
- Chen, G. P. (2008). Advenchen Laboratories, LLC, USA. WO Patent No. 2008112407.
- Enraf–Nonius (1985). CAD-4 Software Enraf–Nonius, Delft, The Netherlands.
- Harms, K. & Wocadlo, S. (1995). XCAD4 University of Marburg, Germany.
- North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359.
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809000956/bh2213sup1.cif
Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000956/bh2213Isup2.hkl
Additional supplementary materials: crystallographic information; 3D view; checkCIF report


