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. 2010 Mar 9;78(8):1950–1958. doi: 10.1002/prot.22711

Figure 2.

Figure 2

Torsion energy profiles for rotation around the χ1 angle in isoleucine. Energy profiles were calculated for three different values of the χ2 angle, namely (A) −60°, (B) 60°, and (C) 178°. The dihedral angle shown here is defined as N–Cα–Cβ–Cγ2. Ab initio energies calculated at the LMP2 level are reported in solid blue lines, whereas Amber ff99SB force field energies are reported in solid black lines. A modified torsion term for the χ1 angle (see Table I) was introduced to maximize the agreement between the ab initio and the force-field energies. The resulting Amber ff99SB-ILDN energies are reported in solid red lines. The dashed lines show the differences between the QM and molecular mechanics energies (with ff99SB in black dashed lines and ff99SB-ILDN in red dashed lines).