Table I.
List of Modified Parameters for the χ1 and χ2 Torsion Potentials in Selected Amino Acids of the Amber ff99SB Force Field
| Res. | Angle | θ0 | k1 | k2 | k3 | k4 | k5 | k6 |
|---|---|---|---|---|---|---|---|---|
| Ile | N–Cα–Cβ–Cγ2 | 0.0 | 0.195 | −0.846 | ||||
| Leu | C–Cα–Cβ–Cγ | 0.0 | 0.571 | −0.358 | 0.135 | |||
| Asp | N–Cα–Cβ–Cγ | 0.0 | −2.635 | −1.190 | −0.007 | 0.423 | 0.232 | −0.213 |
| Cα–Cβ–Cγ–Oδ1,2 | 0.0 | 0.0 | −0.443 | 0.0 | −0.138 | 0.0 | −0.013 | |
| Asn | C–Cα–Cβ–Cγ | 0.0 | 0.571 | −0.596 | 0.118 | −0.417 | 0.104 | −0.101 |
| Cα–Cβ–Cγ–Nδ | 0.0 | −1.046 | −0.181 | −0.035 | 0.100 | 0.130 | −0.106 |
The parameters are in kcal mol−1 and correspond to the torsion potentials that are defined in the main text. Note that for the χ2 torsion in Asp, the correction is applied to both side-chain oxygen atoms.