Table 3. False negative and false positive rates for acceptor and donor site detection for GeneSplicer, NetPlantGene and NetGene2 on the A.thaliana data set.
False negatives (%) | False positives (%) | ||||
(true sites missed) | GeneSplicer | NetGene2 (chr II data) | NetPlantGene (chr II data) | ||
|
|
Train |
Test |
|
|
Acceptor site detection | 9.5 | 1.9 | 2.5 | - | 4.0 |
15.4 | 1.2 | 1.6 | 1.5 | - | |
Donor site detection | 5.9 | 1.7 | 2.3 | 2.7 | - |
7.7 | 1.3 | 1.8 | - | 2.1 |