Table 5. False negative and false positive rates of acceptor and donor site detection compared for GeneSplicer, NetGene2, HSPL, NNSplice, the GENIO splice site and exon predictor, and SpliceView on the human data set.
| True sites missed (%) | False Positives (%) | |||||||
| GeneSplicer | NetG2 | HSPL | NNSplice | GENIO | SpliceView | |||
| |
|
(test) |
(all data) |
(all data) |
(all data) |
(all data) |
(all data) |
(all data) |
| Acceptor sites (5733 true sites) | 5.6 | 5.4 | 4.1 | - | - | - | - | 16.3 |
| 6.4 | 4.9 | 3.7 | 4.6 | - | - | - | - | |
| 19.2 | 2.0 | 1.4 | - | - | - | 3.3 | - | |
| 20.4 | 1.9 | 1.3 | - | 1.5 | - | - | - | |
| 33.0 | 1.2 | 0.7 | - | - | 4.8 | - | - | |
| Donor sites (5733 true sites) | 6.0 | 5.4 | 4.3 | 2.5 | - | - | - | - |
| 7.0 | 4.9 | 3.8 | - | - | - | - | 11.9 | |
| 10.4 | 3.3 | 2.6 | - | 2.5 | - | - | - | |
| 11.2 | 3.1 | 2.5 | - | - | - | 4 | - | |
| 25.3 | 1.4 | 1.4 | - | - | 4.1 | - | - |