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Expected values for genotype-call error rates (− log 10-scaled) under HWE for the Bayes classifier (BC) using true parameter values compared with the filtering approach with 20 and 30% thresholds. Higher values on the − log 10 scale correspond to lower error rates. We considered nucleotide-read error rates of α = 0.001, 0.01 and 0.1, read depths of N = 5, 10, 25, 50 and 100 and allele frequencies of p = 0.5 (a; top) and 0.05 (b; bottom).
