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. 2010 Sep 10;154(3):1040–1052. doi: 10.1104/pp.110.163923

Table I. Assembly statistics of the draft genome preliminary assembly.

Criteria Values
Total no. of reads used 24.89 million
Total no. of bases 5.9 Gb
Average read size 360 bp
No. of reads aligned to contigs 15.99 million (64%)
No. of reads excluded from the assembly as repeats 6.73 million
No. of paired end reads 7.16 million
Amount of both pairs mapped with correct orientation 60%
Amount of bases Q40 or greater 99.12%
Expected coverage 22×
No. of contigs 21,619
Total length of contigs 163.6 million bp
No. of contigs at least N50 1,316
Contig N50 31,906 bp
Minimum contig length 100 bp
Maximum contig length 600,277 bp
Median contig length 1,452 bp
Mean contig length 7,648 bp
No. of scaffolds 3,149
No. of scaffolds at least N50 10
Minimum scaffold length 900 bp
Maximum scaffold length 13,601,491 bp
Median scaffold length 3,660 bp
Mean scaffold length 48,828 bp
Scaffold N50 3,006,489 bp
Scaffold N90 28,644 bp
Total length of scaffolds 153.7 million bp
No. of Ns in the scaffolds 21,969