Table I. Assembly statistics of the draft genome preliminary assembly.
Criteria | Values |
Total no. of reads used | 24.89 million |
Total no. of bases | 5.9 Gb |
Average read size | 360 bp |
No. of reads aligned to contigs | 15.99 million (64%) |
No. of reads excluded from the assembly as repeats | 6.73 million |
No. of paired end reads | 7.16 million |
Amount of both pairs mapped with correct orientation | 60% |
Amount of bases Q40 or greater | 99.12% |
Expected coverage | 22× |
No. of contigs | 21,619 |
Total length of contigs | 163.6 million bp |
No. of contigs at least N50 | 1,316 |
Contig N50 | 31,906 bp |
Minimum contig length | 100 bp |
Maximum contig length | 600,277 bp |
Median contig length | 1,452 bp |
Mean contig length | 7,648 bp |
No. of scaffolds | 3,149 |
No. of scaffolds at least N50 | 10 |
Minimum scaffold length | 900 bp |
Maximum scaffold length | 13,601,491 bp |
Median scaffold length | 3,660 bp |
Mean scaffold length | 48,828 bp |
Scaffold N50 | 3,006,489 bp |
Scaffold N90 | 28,644 bp |
Total length of scaffolds | 153.7 million bp |
No. of Ns in the scaffolds | 21,969 |