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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2009 Nov 25;65(Pt 12):o3192. doi: 10.1107/S1600536809048302

2-(4-Chloro­phen­yl)imidazo[1,2-a]pyridine-3-carbaldehyde

Yun-Hui Li a,*, Wen-Yu Liu a, Yang Gao b, Yu-Peng Wang a
PMCID: PMC2971907  PMID: 21578903

Abstract

The asymmetric unit of the title compound, C14H9ClN2O, contains two mol­ecules with dihedral angles of 33.52 (11) and 34.58 (11)° between their benzene rings and imidazole ring systems. In the crystal, C—H⋯N and C—H⋯O inter­actions are observed. The crystal examined was found to be a racemic twin.

Related literature

For the synthesis, see: Burkholder et al. (2001).graphic file with name e-65-o3192-scheme1.jpg

Experimental

Crystal data

  • C14H9ClN2O

  • M r = 256.68

  • Orthorhombic, Inline graphic

  • a = 21.3367 (13) Å

  • b = 7.2391 (4) Å

  • c = 15.1748 (10) Å

  • V = 2343.9 (2) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.31 mm−1

  • T = 293 K

  • 0.35 × 0.29 × 0.28 mm

Data collection

  • Bruker SMART APEX CCD diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2002) T min = 0.870, T max = 0.894

  • 12428 measured reflections

  • 4198 independent reflections

  • 3564 reflections with I > 2σ(I)

  • R int = 0.026

Refinement

  • R[F 2 > 2σ(F 2)] = 0.036

  • wR(F 2) = 0.089

  • S = 1.03

  • 4198 reflections

  • 325 parameters

  • 1 restraint

  • H-atom parameters constrained

  • Δρmax = 0.22 e Å−3

  • Δρmin = −0.18 e Å−3

  • Absolute structure: Flack (1983), 1800 Friedel pairs

  • Flack parameter: 0.40 (5)

Data collection: SMART (Bruker, 2002); cell refinement: SAINT (Bruker, 2002); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809048302/hb5204sup1.cif

e-65-o3192-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048302/hb5204Isup2.hkl

e-65-o3192-Isup2.hkl (205.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C11—H11⋯O2i 0.93 2.54 3.442 (3) 163
C12—H12⋯N4ii 0.93 2.59 3.518 (4) 172

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors thank Changchun University of Science and Technology for supporting this work.

supplementary crystallographic information

Experimental

To a solution of 2.0 mmol 2-(4-chlorophenyl)H-imidazo[1,2-a]pyridine (Burkholder et al., 2001) in DMF (10 ml) was added phosphoryl trichloride (2.2 mmol) in one portion at room temperature under stirring. The mixture was heated to 353 K and stirred for 5.0 h. After the intermediate was consumed (monitored by TLC), the reaction mixture was extracted, filtered and concentrated in vacuo. The pure product was obtained through silica gel chromatography, and yellow blocks of (I) were obtained by slow evaporation of an ethyl acetate/petroleum ether (1:1) solution at room temperature.

Refinement

All H atoms were generated geometrically and refined as riding atoms with C—H = 0.93Å and Uiso(H) = 1.2 Ueq(C).

Figures

Fig. 1.

Fig. 1.

Molecular structure of (I) with displacement ellipsoids drawn at the 30% probability level for non-H atoms.

Crystal data

C14H9ClN2O F(000) = 1056
Mr = 256.68 Dx = 1.455 Mg m3
Orthorhombic, Pna21 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2n Cell parameters from 4265 reflections
a = 21.3367 (13) Å θ = 1.9–26.0°
b = 7.2391 (4) Å µ = 0.31 mm1
c = 15.1748 (10) Å T = 293 K
V = 2343.9 (2) Å3 Block, yellow
Z = 8 0.35 × 0.29 × 0.28 mm

Data collection

Bruker APEX CCD diffractometer 4198 independent reflections
Radiation source: fine-focus sealed tube 3564 reflections with I > 2σ(I)
graphite Rint = 0.026
ω scans θmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002) h = −26→26
Tmin = 0.870, Tmax = 0.894 k = −8→8
12428 measured reflections l = −15→18

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036 H-atom parameters constrained
wR(F2) = 0.089 w = 1/[σ2(Fo2) + (0.0461P)2 + 0.2155P] where P = (Fo2 + 2Fc2)/3
S = 1.03 (Δ/σ)max < 0.001
4198 reflections Δρmax = 0.22 e Å3
325 parameters Δρmin = −0.18 e Å3
1 restraint Absolute structure: Flack (1983), 1800 Friedel pairs
Primary atom site location: structure-invariant direct methods Flack parameter: 0.40 (5)

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cl1 0.38891 (3) 0.69710 (12) 0.18830 (6) 0.0741 (3)
Cl2 0.86516 (3) 1.12252 (11) 0.50704 (6) 0.0673 (2)
O2 0.48266 (8) 1.0458 (3) 0.48167 (13) 0.0652 (6)
O1 0.76678 (8) 0.5045 (3) 0.22142 (13) 0.0620 (5)
N1 0.73924 (8) 0.6319 (3) 0.39935 (13) 0.0373 (4)
N2 0.64367 (8) 0.7006 (3) 0.45277 (14) 0.0434 (5)
N4 0.60866 (9) 1.2130 (3) 0.24891 (14) 0.0403 (5)
C6 0.57814 (10) 0.6745 (3) 0.32064 (17) 0.0387 (6)
N3 0.51184 (8) 1.1689 (3) 0.30384 (13) 0.0368 (4)
C7 0.63898 (10) 0.6637 (3) 0.36576 (16) 0.0345 (5)
C21 0.61298 (10) 1.1699 (3) 0.33495 (17) 0.0370 (5)
C11 0.83204 (12) 0.6244 (4) 0.48197 (19) 0.0507 (7)
H11 0.8750 0.6038 0.4857 0.061*
C17 0.79144 (11) 1.1336 (4) 0.45777 (19) 0.0467 (6)
C14 0.70483 (10) 0.6813 (3) 0.47280 (16) 0.0400 (6)
C20 0.67494 (10) 1.1586 (3) 0.37871 (17) 0.0376 (6)
C8 0.69729 (10) 0.6195 (3) 0.32942 (16) 0.0360 (5)
C28 0.54724 (10) 1.2129 (3) 0.23030 (16) 0.0384 (6)
C18 0.78521 (11) 1.0860 (4) 0.37049 (19) 0.0489 (6)
H18 0.8198 1.0467 0.3382 0.059*
C22 0.55419 (10) 1.1401 (3) 0.37297 (16) 0.0380 (5)
C19 0.72678 (10) 1.0975 (3) 0.33157 (17) 0.0423 (6)
H19 0.7221 1.0638 0.2728 0.051*
C2 0.51455 (11) 0.7437 (4) 0.1929 (2) 0.0505 (6)
H2 0.5110 0.7846 0.1350 0.061*
C9 0.71397 (11) 0.5482 (3) 0.24447 (17) 0.0434 (6)
H9 0.6819 0.5340 0.2035 0.052*
C5 0.52395 (11) 0.6241 (3) 0.36600 (18) 0.0448 (6)
H5 0.5268 0.5846 0.4242 0.054*
C24 0.44781 (11) 1.1572 (3) 0.30118 (19) 0.0462 (6)
H24 0.4251 1.1274 0.3515 0.055*
C27 0.51591 (12) 1.2473 (4) 0.15048 (19) 0.0492 (6)
H27 0.5384 1.2786 0.1001 0.059*
C13 0.73559 (11) 0.7049 (4) 0.55341 (19) 0.0507 (7)
H13 0.7133 0.7401 0.6033 0.061*
C10 0.80304 (10) 0.6045 (3) 0.40399 (19) 0.0446 (6)
H10 0.8257 0.5727 0.3539 0.054*
C26 0.45240 (12) 1.2345 (4) 0.14768 (19) 0.0526 (7)
H26 0.4314 1.2554 0.0949 0.063*
C1 0.57237 (11) 0.7353 (4) 0.23404 (18) 0.0439 (6)
H1 0.6080 0.7709 0.2032 0.053*
C16 0.74146 (11) 1.1959 (4) 0.5060 (2) 0.0497 (6)
H16 0.7466 1.2286 0.5649 0.060*
C4 0.46599 (12) 0.6322 (4) 0.32548 (19) 0.0497 (6)
H4 0.4300 0.5988 0.3561 0.060*
C23 0.53638 (11) 1.0703 (3) 0.45701 (17) 0.0463 (6)
H23 0.5683 1.0410 0.4963 0.056*
C15 0.68309 (11) 1.2097 (4) 0.46614 (18) 0.0468 (6)
H15 0.6491 1.2536 0.4983 0.056*
C12 0.79878 (12) 0.6758 (4) 0.5579 (2) 0.0513 (7)
H12 0.8197 0.6899 0.6112 0.062*
C25 0.41833 (12) 1.1899 (4) 0.22393 (19) 0.0514 (7)
H25 0.3749 1.1827 0.2212 0.062*
C3 0.46229 (12) 0.6899 (4) 0.23968 (19) 0.0485 (7)

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cl1 0.0499 (4) 0.0888 (6) 0.0835 (6) 0.0081 (4) −0.0283 (4) −0.0004 (5)
Cl2 0.0459 (3) 0.0834 (5) 0.0725 (5) −0.0041 (3) −0.0179 (3) 0.0060 (4)
O2 0.0454 (10) 0.0979 (15) 0.0524 (12) −0.0022 (10) 0.0123 (9) 0.0151 (11)
O1 0.0459 (10) 0.0937 (16) 0.0462 (12) 0.0041 (10) 0.0086 (9) −0.0156 (10)
N1 0.0354 (10) 0.0400 (11) 0.0365 (12) −0.0013 (8) −0.0023 (9) −0.0030 (8)
N2 0.0392 (10) 0.0512 (13) 0.0399 (14) 0.0004 (9) 0.0005 (10) −0.0062 (10)
N4 0.0380 (10) 0.0492 (12) 0.0337 (12) −0.0002 (9) 0.0021 (9) −0.0003 (9)
C6 0.0399 (13) 0.0367 (12) 0.0393 (15) 0.0020 (10) −0.0026 (11) −0.0046 (11)
N3 0.0343 (10) 0.0400 (10) 0.0361 (12) 0.0006 (8) −0.0024 (9) −0.0024 (8)
C7 0.0354 (11) 0.0351 (12) 0.0331 (13) 0.0008 (9) −0.0014 (10) −0.0026 (10)
C21 0.0393 (12) 0.0365 (12) 0.0354 (14) 0.0017 (10) 0.0030 (11) −0.0013 (10)
C11 0.0389 (12) 0.0547 (16) 0.0585 (19) 0.0020 (11) −0.0094 (13) −0.0043 (13)
C17 0.0409 (13) 0.0476 (15) 0.0517 (18) −0.0066 (11) −0.0098 (13) 0.0087 (12)
C14 0.0388 (12) 0.0448 (14) 0.0364 (15) 0.0006 (11) 0.0010 (11) −0.0068 (10)
C20 0.0357 (12) 0.0385 (13) 0.0384 (15) −0.0040 (9) −0.0001 (10) 0.0044 (11)
C8 0.0366 (12) 0.0379 (12) 0.0337 (13) −0.0032 (9) −0.0010 (10) 0.0000 (10)
C28 0.0377 (12) 0.0444 (14) 0.0333 (14) −0.0012 (10) 0.0025 (10) −0.0032 (10)
C18 0.0387 (13) 0.0547 (17) 0.0533 (18) 0.0038 (11) 0.0035 (12) 0.0056 (13)
C22 0.0352 (12) 0.0413 (13) 0.0375 (14) 0.0011 (9) 0.0005 (11) −0.0015 (10)
C19 0.0411 (13) 0.0500 (14) 0.0359 (14) 0.0018 (10) 0.0011 (11) 0.0014 (11)
C2 0.0561 (15) 0.0541 (17) 0.0411 (16) 0.0085 (12) −0.0045 (14) 0.0009 (13)
C9 0.0438 (13) 0.0479 (15) 0.0385 (14) −0.0032 (11) 0.0001 (11) −0.0027 (11)
C5 0.0418 (13) 0.0505 (15) 0.0421 (15) 0.0007 (10) 0.0016 (11) −0.0004 (12)
C24 0.0359 (12) 0.0513 (15) 0.0513 (17) −0.0028 (11) 0.0038 (12) −0.0016 (12)
C27 0.0536 (15) 0.0571 (16) 0.0368 (16) −0.0002 (12) −0.0031 (13) −0.0029 (12)
C13 0.0513 (15) 0.0651 (17) 0.0357 (16) 0.0014 (13) −0.0052 (13) −0.0103 (13)
C10 0.0341 (12) 0.0499 (15) 0.0497 (16) 0.0014 (11) 0.0010 (11) −0.0045 (12)
C26 0.0545 (15) 0.0571 (16) 0.0463 (18) 0.0074 (13) −0.0121 (14) −0.0076 (13)
C1 0.0408 (13) 0.0475 (15) 0.0435 (17) 0.0017 (11) 0.0008 (11) 0.0011 (11)
C16 0.0509 (14) 0.0592 (16) 0.0389 (16) −0.0058 (12) −0.0078 (13) −0.0015 (13)
C4 0.0378 (13) 0.0559 (16) 0.0555 (18) −0.0022 (11) −0.0025 (12) −0.0025 (13)
C23 0.0425 (13) 0.0539 (15) 0.0424 (15) −0.0009 (11) 0.0028 (12) 0.0038 (12)
C15 0.0449 (13) 0.0561 (17) 0.0395 (17) −0.0011 (11) 0.0036 (12) 0.0015 (12)
C12 0.0503 (15) 0.0621 (17) 0.0414 (16) −0.0041 (13) −0.0133 (13) −0.0032 (13)
C25 0.0402 (13) 0.0579 (17) 0.0560 (18) 0.0024 (12) −0.0091 (13) −0.0064 (13)
C3 0.0421 (13) 0.0475 (15) 0.0560 (18) 0.0069 (11) −0.0129 (13) −0.0065 (13)

Geometric parameters (Å, °)

Cl1—C3 1.750 (3) C28—C27 1.406 (4)
Cl2—C17 1.743 (2) C18—C19 1.382 (3)
O2—C23 1.219 (3) C18—H18 0.9300
O1—C9 1.221 (3) C22—C23 1.424 (3)
N1—C10 1.378 (3) C19—H19 0.9300
N1—C14 1.382 (3) C2—C3 1.378 (4)
N1—C8 1.391 (3) C2—C1 1.384 (3)
N2—C14 1.347 (3) C2—H2 0.9300
N2—C7 1.351 (3) C9—H9 0.9300
N4—C28 1.341 (3) C5—C4 1.382 (3)
N4—C21 1.346 (3) C5—H5 0.9300
C6—C1 1.391 (4) C24—C25 1.351 (4)
C6—C5 1.394 (3) C24—H24 0.9300
C6—C7 1.470 (3) C27—C26 1.359 (3)
N3—C24 1.369 (3) C27—H27 0.9300
N3—C28 1.385 (3) C13—C12 1.366 (3)
N3—C22 1.400 (3) C13—H13 0.9300
C7—C8 1.398 (3) C10—H10 0.9300
C21—C22 1.397 (3) C26—C25 1.404 (4)
C21—C20 1.482 (3) C26—H26 0.9300
C11—C10 1.343 (4) C1—H1 0.9300
C11—C12 1.403 (4) C16—C15 1.389 (3)
C11—H11 0.9300 C16—H16 0.9300
C17—C16 1.370 (4) C4—C3 1.370 (4)
C17—C18 1.375 (4) C4—H4 0.9300
C14—C13 1.399 (4) C23—H23 0.9300
C20—C15 1.388 (4) C15—H15 0.9300
C20—C19 1.390 (3) C12—H12 0.9300
C8—C9 1.434 (3) C25—H25 0.9300
C10—N1—C14 121.4 (2) C1—C2—H2 120.8
C10—N1—C8 131.7 (2) O1—C9—C8 125.4 (2)
C14—N1—C8 106.87 (18) O1—C9—H9 117.3
C14—N2—C7 105.8 (2) C8—C9—H9 117.3
C28—N4—C21 105.7 (2) C4—C5—C6 120.8 (3)
C1—C6—C5 118.4 (2) C4—C5—H5 119.6
C1—C6—C7 122.3 (2) C6—C5—H5 119.6
C5—C6—C7 119.2 (2) C25—C24—N3 118.6 (2)
C24—N3—C28 122.3 (2) C25—C24—H24 120.7
C24—N3—C22 131.1 (2) N3—C24—H24 120.7
C28—N3—C22 106.61 (18) C26—C27—C28 119.3 (3)
N2—C7—C8 111.4 (2) C26—C27—H27 120.4
N2—C7—C6 120.7 (2) C28—C27—H27 120.4
C8—C7—C6 127.9 (2) C12—C13—C14 119.2 (2)
N4—C21—C22 112.0 (2) C12—C13—H13 120.4
N4—C21—C20 120.6 (2) C14—C13—H13 120.4
C22—C21—C20 127.4 (2) C11—C10—N1 119.0 (2)
C10—C11—C12 121.3 (2) C11—C10—H10 120.5
C10—C11—H11 119.4 N1—C10—H10 120.5
C12—C11—H11 119.4 C27—C26—C25 120.4 (3)
C16—C17—C18 121.5 (2) C27—C26—H26 119.8
C16—C17—Cl2 119.2 (2) C25—C26—H26 119.8
C18—C17—Cl2 119.3 (2) C2—C1—C6 121.2 (2)
N2—C14—N1 111.1 (2) C2—C1—H1 119.4
N2—C14—C13 129.7 (2) C6—C1—H1 119.4
N1—C14—C13 119.2 (2) C17—C16—C15 119.2 (3)
C15—C20—C19 118.5 (2) C17—C16—H16 120.4
C15—C20—C21 121.7 (2) C15—C16—H16 120.4
C19—C20—C21 119.8 (2) C3—C4—C5 119.2 (3)
N1—C8—C7 104.9 (2) C3—C4—H4 120.4
N1—C8—C9 123.3 (2) C5—C4—H4 120.4
C7—C8—C9 131.1 (2) O2—C23—C22 125.3 (2)
N4—C28—N3 111.3 (2) O2—C23—H23 117.3
N4—C28—C27 130.3 (2) C22—C23—H23 117.3
N3—C28—C27 118.4 (2) C20—C15—C16 120.7 (2)
C17—C18—C19 118.9 (2) C20—C15—H15 119.7
C17—C18—H18 120.5 C16—C15—H15 119.7
C19—C18—H18 120.5 C13—C12—C11 120.0 (3)
C21—C22—N3 104.3 (2) C13—C12—H12 120.0
C21—C22—C23 131.6 (2) C11—C12—H12 120.0
N3—C22—C23 123.5 (2) C24—C25—C26 121.0 (2)
C18—C19—C20 121.1 (2) C24—C25—H25 119.5
C18—C19—H19 119.4 C26—C25—H25 119.5
C20—C19—H19 119.4 C4—C3—C2 122.0 (2)
C3—C2—C1 118.5 (3) C4—C3—Cl1 119.0 (2)
C3—C2—H2 120.8 C2—C3—Cl1 119.1 (2)

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C11—H11···O2i 0.93 2.54 3.442 (3) 163
C12—H12···N4ii 0.93 2.59 3.518 (4) 172

Symmetry codes: (i) x+1/2, −y+3/2, z; (ii) −x+3/2, y−1/2, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: HB5204).

References

  1. Bruker (2002). SMART, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Burkholder, C., Dolbier, W. R., Medebielle, M. & Ait-Mohand, S. (2001). Tetrahedron Lett. 42, 3077–3080.
  3. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809048302/hb5204sup1.cif

e-65-o3192-sup1.cif (20.4KB, cif)

Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048302/hb5204Isup2.hkl

e-65-o3192-Isup2.hkl (205.7KB, hkl)

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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