Table 2. Spectroscopic properties of ethidium derivatives.
Compound | λmax exc/emi (nm) | Φrel | λmax exc/emi (nm) | Φrel |
|
freea |
freeb |
bounda |
boundb |
Ethidium | 480/613 | 0.14 | 518/599 | ndd |
1 | 558/c | <<0.01 | 586/c | <0.01 |
2 | 477/597 | 0.06 | 508/595 | 0.25 |
3 | 551/c | 0.02 | 577/c | 0.03 |
4 | 464/603 | 0.04 | 494/592 | 0.20 |
The compounds used in this study are shown in Figure 1C.
aThe positions of the maxima of absorption in the visible region (left) and fluorescence emission (right) are given in nm.
bRelative fluorescence quantum yield, as compared to ethidium bound to dsDNA (Φrel = 1). For 1, 2, 3 and 4 these values correspond to the dye bound to saturating amounts (2× molar excess) of quadruplex DNA (22A) in a 10 mM sodium cacodylate, 0.1 M KCl, pH 7.3 buffer.
cVery weak emission.
dDue to its low affinity for quadruplex DNA, the fluorescence quantum yield of ethidium bound to 22A could not be determined under identical conditions.