. 2010 Nov;186(3):1033–1044. doi: 10.1534/genetics.110.120873

TABLE 1.

Pairs of SNPs showing the highest covariance of allelic effects for growth cessation

Locus	SNP	F_ST	P_cline^a	Locus	SNP	F_ST	P_cline^a	Cov^b
LHY2	2327	0.023	0.002	PHYB2	6030	0.019	0.021	2.433
LHY2	2327	0.023	0.002	CRY2.1	375	0.021	0.213	1.495
APRR5	1291	0.012	0.035	LHY2	2327	0.002	0.002	1.154
PHYB2	6030	0.019	0.021	CRY2.1	375	0.021	0.213	1.133
APRR5	1291	0.012	0.035	PHYB2	6030	0.019	0.021	1.115
COL2B	Poly(E)9	0.066	0.113	PHYB2	6030	0.019	0.021	1.011
LHY2	2327	0.023	0.002	GA20ox1	516	0.014	0.329	0.999

Probability of clinal variation of allele frequency with latitude.

Covariance of allelic effects (calculated using Equation 2).