Tabel III.
Thioesterase Folds
| Family | Fold | RMSDave (Å) | Pave (%) | PDB files |
|---|---|---|---|---|
| TE1 | NagB | 1.25 | 96.4 | 2G39, 2NVV |
| TE2 | α/β-Hydrolase | 1.00 | 96.6 | 3HLK, 3K2I |
| TE3 | Flavodoxin-like | 0.58 | 96.6 | 1IVN, 1J00, 1JRL, 1U8U, 1V2G, 3HP4 |
| TE4 | HotDog | 0.90 | 33.3 | 1C8U, 1TBU |
| TE5 | HotDog | — | — | 1NJK |
| TE6 | HotDog | 1.39 | 75.9 | 3B7K, 2Q2B, 2V1O, 2QQ2, 1YLI, 3BJK, 3D6L |
| TE7 | HotDog | — | — | |
| TE8 | HotDog | 0.58 | 88.3 | 2H4U, 3F5O, 2F0X, 2CY9 |
| TE9 | HotDog | 1.19 | 88.8 | 2PZH, 1S5U, 3HM0, 1Z54 |
| TE10 | HotDog | 0.67 | 97.1 | 1BVQ, 1LO7, 1LO8, 1LO9 |
| TE11 | HotDog | 0.87 | 93.9 | 1Q4S, 1Q4T, 1Q4U, 1VH9, 2B6E, 1SC0, 3LZ7 |
| TE12 | HotDog | — | — | 2VEU |
| TE13 | HotDog | 0.43 | 94.6 | 2FS2, 1PSU, 2DSL0, 1J1Y, 1WLU, 1WLV, 1WM6, 1WN3 |
| TE14 | HotDog | 1.65 | 87.7 | 2OWN, 2ESS |
| TE15 | HotDog | — | — | 2W3X |
| TE16 | α/β-Hydrolase | 1.51 | 66.9 | 2VZ8,a 2VZ9,a 2PX6, 1XKT, 2ROQ,b 2CB9, 2CBG, 2VSQ, 1JMK |
| TE17 | α/β-Hydrolase | 1.67 | 82.4 | 1MO2, 1KEZ, 1MN6, 2H7X, 2H7Y, 2HFK, 2HFJ, 1MNA, 1MNQ |
| TE18 | α/β-Hydrolase | 0.83 | 97.2 | 3FLA, 3FLB, 2RON,b 2K2Qb |
| TE19 | α/β-Hydrolase | — | — | 1THT |
| TE20 | α/β-Hydrolase | 1.41 | 91.2 | 1EH5, 3GRO, 1EI9, 1EXW, 1PJA |
| TE21 | α/β-Hydrolase | 0.82 | 96.7 | 1FJ2, 1AUO, 1AUR, 3CN7, 3CN9 |
| TE22 | α/β-Hydrolase | 1.69 | 78.9 | 3FCX, 3C6B, 2UZ0, 1PV1, 3I6Y, 3E4D, 3LS2 |
| TE23 | Lactamase | 1.67 | 78.5 | 2QED, 1XM8, 2P18, 2GCU, 2Q42, 1QH3, 1QH5, 2P1E |
a
2VZ8 and 2VZ9 have TE domains in their FASTA format. Therefore, these were picked up by BLAST, but their PDB files do not include the TE domain, and they were not included in the RMSD calculation.
b
NMR-resolved structures not included in RMSD calculation.