TABLE 2.
Primer or probe | Specificity | Sequence (5′-3′) | Target genes | Base position | Application | Reference |
---|---|---|---|---|---|---|
27f | Bacteria | AGAGTTTGATCCTGGCTCAG | 16S rRNA | 8-27 | PCR | 28 |
1492r | Universal | TACGGYTACCTTGTTACGACTT | 16S rRNA | 1492-1513 | PCR | 28 |
CTO189fA/B | AOB | GGAGRAAAGCAGGGGATCG | 16S rRNA | 190-208 | PCR | 26 |
CTO189fC | AOB | GGAGGAAAGTAGGGGATCG | 16S rRNA | 190-208 | PCR | 26 |
CTO654r | AOB | CTAGCYTTGTAGTTTCAAACGC | 16S rRNA | 633-654 | PCR | 26 |
DSRp2060f | SRB | CAACATCGTYCAYACCCAGGG | dsrB | PCR | 17 | |
DSR4r | SRB | GTGTAGCAGTTACCGCA | dsrB | PCR | 17 | |
GAL1f | Gallionella genus | CGAAAGTTACGCTAATACCGCATA | 16S rRNA | 158-181a | qPCR | This study |
GAL1r | Gallionella genus | CTCAGACCAGCTACGGATCGT | 16S rRNA | 279-299a | qPCR | This study |
GAL1p | Gallionella genus | CCTCTCGCTTTCGGAGTGGCCG | 16S rRNA | 214-235a | qPCR | This study |
GAL2f | Gallionella genus | AAGCGGTGGATTATGTGGATT | 16S rRNA | 937-957a | qPCR | This study |
GAL2r | Gallionella genus | ACAAGGGTTGCGCTCGTT | 16S rRNA | 1101-1118a | qPCR | This study |
GAL2p | Gallionella genus | CCAGGAAGATTTCAGAGATGAGATTGTGCC | 16S rRNA | 999-1028a | qPCR | This study |
UNI331f | Bacteria | TCCTACGGGAGGCAGCAGT | 16S rRNA | 340-358 | qPCR | 37 |
UNI797r | Bacteria | GGACTACCAGGGTATCTAATCCTGTT | 16S rRNA | 781-806 | qPCR | 37 |
UNIp | Bacteria | CGTATTACCGCGGCTGCTGGCAC | 16S rRNA | 515-537 | qPCR | 37 |
NSO190 | AOB | CGATCCCCTGCTTTTCTCC | 16S rRNA | 190-208 | FISH | 35 |
According to Escherichia coli numbering (4).