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. 2010 Sep 17;76(21):7171–7180. doi: 10.1128/AEM.00832-10

TABLE 2.

Oligonucleotide primers and probes used in this study

Primer or probe Specificity Sequence (5′-3′) Target genes Base position Application Reference
27f Bacteria AGAGTTTGATCCTGGCTCAG 16S rRNA 8-27 PCR 28
1492r Universal TACGGYTACCTTGTTACGACTT 16S rRNA 1492-1513 PCR 28
CTO189fA/B AOB GGAGRAAAGCAGGGGATCG 16S rRNA 190-208 PCR 26
CTO189fC AOB GGAGGAAAGTAGGGGATCG 16S rRNA 190-208 PCR 26
CTO654r AOB CTAGCYTTGTAGTTTCAAACGC 16S rRNA 633-654 PCR 26
DSRp2060f SRB CAACATCGTYCAYACCCAGGG dsrB PCR 17
DSR4r SRB GTGTAGCAGTTACCGCA dsrB PCR 17
GAL1f Gallionella genus CGAAAGTTACGCTAATACCGCATA 16S rRNA 158-181a qPCR This study
GAL1r Gallionella genus CTCAGACCAGCTACGGATCGT 16S rRNA 279-299a qPCR This study
GAL1p Gallionella genus CCTCTCGCTTTCGGAGTGGCCG 16S rRNA 214-235a qPCR This study
GAL2f Gallionella genus AAGCGGTGGATTATGTGGATT 16S rRNA 937-957a qPCR This study
GAL2r Gallionella genus ACAAGGGTTGCGCTCGTT 16S rRNA 1101-1118a qPCR This study
GAL2p Gallionella genus CCAGGAAGATTTCAGAGATGAGATTGTGCC 16S rRNA 999-1028a qPCR This study
UNI331f Bacteria TCCTACGGGAGGCAGCAGT 16S rRNA 340-358 qPCR 37
UNI797r Bacteria GGACTACCAGGGTATCTAATCCTGTT 16S rRNA 781-806 qPCR 37
UNIp Bacteria CGTATTACCGCGGCTGCTGGCAC 16S rRNA 515-537 qPCR 37
NSO190 AOB CGATCCCCTGCTTTTCTCC 16S rRNA 190-208 FISH 35
a

According to Escherichia coli numbering (4).