TABLE 3.
Phylum | Class | Order | Family | Genus | No. of clones (no. of OTUs) in sampleb: |
|||
---|---|---|---|---|---|---|---|---|
Z | J | S | D | |||||
Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Caulobacter | 1 (1) | 1 (1) | ||
Brevundimonas | 1 (1) | |||||||
Rhodospirillales | Unclassified | 1 (1) | 1 (1) | |||||
Sphingomonadales | Sphingomonadaceae | Sphingomonas | 4 (3) | 2 (2) | 7 (5) | 1 (1) | ||
Novosphingobium | 2 (1) | |||||||
Sphingopyxis | 2 (1) | 1 (1) | 3 (2) | |||||
Unclassified | 1 (1) | 3 (3) | ||||||
Rhodobacterales | Rhodobacteraceae | Rhodobacter | 1 (1) | |||||
Rhizobiales | Bradyrhizobiaceae | Afipia | 1 (1) | |||||
Hyphomicrobiaceae | Hyphomicrobium | 1 (1) | ||||||
Brucellaceae | Ochrobactrum | 1 (1) | ||||||
Unclassified | 10 (3) | 2 (2) | 2 (1) | |||||
Unclassified | 2 (2) | 4 (2) | 5 (5) | |||||
Betaproteobacteria | Rhodocyclales | Rhodocyclaceae | Rhodocyclus | 2 (1) | 2 (1) | |||
Ferribacterium | 3 (1) | 2 (2) | ||||||
Propionivibrio | 4 (1) | |||||||
Unclassified | 40 (7) | 8 (5) | 16 (9) | 5 (5) | ||||
Nitrosomonadales | Gallionellaceae | Gallionella | 42 (15) | 27 (13) | 20 (11) | |||
Burkholderiales | Comamonadaceae | Curvibacter | 1 (1) | |||||
Rhodoferax | 1 (1) | 1 (1) | ||||||
Comamonas | 1 (1) | |||||||
Simplicispira | 1 (1) | |||||||
Unclassified | 1 (1) | 3 (3) | ||||||
Oxalobacteraceae | Herbaspirillum | 14 (2) | 2 (2) | 6 (4) | ||||
Unclassified | 10 (7) | 2 (2) | 2 (2) | 1 (1) | ||||
Gammaproteobacteria | Legionellales | Legionellaceae | Legionella | 1 (1) | ||||
Coxiellaceae | Coxiella | 1 (1) | 1 (1) | |||||
Pseudomonadales | Pseudomonadaceae | Pseudomonas | 1 (1) | 57 (11) | 14 (6) | |||
Xanthomonadales | Xanthomonadaceae | Nevskia | 4 (2) | |||||
Hydrocarboniphaga | 1 (1) | |||||||
Thermomonas | 2 (2) | |||||||
Unclassified | 1 (1) | 3 (2) | 1 (1) | |||||
Unclassified | 3 (1) | 1 (1) | ||||||
Deltaproteobacteria | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | 1 (1) | ||||
Unclassified | 1 (1) | |||||||
Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Sulfuricurvum | 2 (1) | 16 (6) | |||
Unclassified | 2 (2) | 5 (1) | 5 (5) | 2 (2) | ||||
Bacteroidetes | Flavobacteria | Flavobacteriales | Flavobacteriaceae | Empedobacter | 1 (1) | |||
Flavobacterium | 9 (7) | |||||||
Cloacibacterium | 1 (1) | |||||||
Unclassified | 1 (1) | |||||||
Sphingobacteria | Sphingobacteriales | Sphingobacteriaceae | Sphingobacterium | 3 (2) | ||||
Pedobacter | 1 (1) | |||||||
Flexibacteraceae | Dyadobacter | 1 (1) | ||||||
Unclassified | 1 (1) | 5 (4) | ||||||
Actinobacteria | Actinobacteria | Actinomycetales | Actinomycetaceae | Actinomyces | 1 (1) | |||
Micrococcaceae | Arthrobacter | 1 (1) | ||||||
Microbacteriaceae | Microbacterium | 1 (1) | ||||||
Planctomycetes | Planctomycetacia | Planctomycetales | Planctomycetaceae | Unclassified | 1 (1) | |||
Unclassified | 4 (4) | |||||||
Total | 147 (57) | 115 (45) | 107 (72) | 64 (48) |
Classification was based on match results of RDP and the GenBank database.
A blank indicates that no related clones were obtained.