TABLE 1.

Summary of the total number of transcripts with altered expression associated with each comparison of clinical and ocular infection status

Comparison	No. of transcripts
	B ≥ 0	Fold change	n	Adjusted P < 0.01	Expected false positives	Direction of gene expression change
N vs DI	18,792	<0.6 and >1.6	4,993	4,845	48	Up	2,024
						Down	2,821
		<0.5 and >2.0	2,365	2,316	23	Up	1,104
						Down	1,212
N vs D	8,325	<0.6 and >1.6	1,457	1,172	12	Up	491
						Down	681
		<0.5 and >2.0	468	421	4	Up	195
						Down	226
D vs DI	4,100	<0.6 and >1.6	1,418	894	9	Up	445
						Down	459
		<0.5 and >2.0	482	341	3	Up	151
						Down	190