TABLE 1.
Field sites where RCV-A1 was present including the samples used in analysis
Regiona | Site | Year | Location | Sample | Sequenced region (nt)b | GenBank accession no. |
---|---|---|---|---|---|---|
Canberra, ACT | Gungahlin | 2007 | Lat −35.13, long 149.07 | GUN 1-11 | 4566-7159 | GU368903 |
Bathurst, NSW | Valpine | 2007 | Lat −33.23, long 149.28 | V-5 | 4458-7162 | GU368899 |
V-8 | 4458-7162 | GU368900 | ||||
V-11 | 4566-7159 | GU373616 | ||||
Oakey Creek | 2007 | Lat −33.20, long 149.20 | OC-7 | 4458-7162 | GU368898 | |
OC-13 | 4458-7162 | GU368894 | ||||
OC-15 | 4458-7162 | GU368895 | ||||
OC-20 | 4566-7159 | GU368908 | ||||
OC-21 | 4566-7159 | GU368909 | ||||
OC-26 | 4458-7162 | GU368896 | ||||
OC-33 | 4566-7159 | GU368910 | ||||
OC-36 | 4458-7162 | GU368897 | ||||
OC-39 | 4566-7159 | GU368911 | ||||
OC-40 | 4566-7159 | GU368912 | ||||
Hawkesbury, NSW | Cattai National Park | 2007 | Lat −33.32, long 150.30 | CAT 2-5 | 4566-7159 | GU368905 |
CAT 2-10 | 4566-7159 | GU368904 | ||||
CAT 2-12 | 4458-7162 | GU368889 | ||||
CAT 3-4 | 4458-7162 | GU368890 | ||||
CAT 7-1 | 4458-7162 | GU368891 | ||||
Michelago, NSW | Michelago | 2007 | Lat −35.44, long 149.09 | MIC 1-5 | 4566-7109 | GU373614 |
MIC 3-3 | 4458-7162 | GU368892 | ||||
MIC 4-6 | 4566-7159 | GU368907 | ||||
MIC 4-9 | 5290-7032 | GU373615 | ||||
MIC 5-8 | 4566-7159 | GU368893 | ||||
MIC 5-10 | 4458-7162 | GU368906 | ||||
RCV-A1 Michelago | Complete genome | EU871528 | ||||
Burragate, NSW | Burragate | 2007 | Lat −37.00, long 149.37 | BUR 1-1 | 4458-7162 | GU368888 |
Bacchus Marsh, VIC | Bacchus Marsh | 2009 | Lat −37.39, long 144.20 | BM-40 | 4566-7159 | GU368916 |
BM-41 | 4566-7159 | GU368917 | ||||
BM-49 | 4566-7159 | GU368919 | ||||
BM-58 | 4566-7159 | GU368918 | ||||
Bendigo, VIC | Bendigo | 2009 | Lat −37.00, long 144.22 | BEN-12 | 4566-7159 | GU368913 |
BEN-16 | 4566-7159 | GU368914 | ||||
BEN-26 | 4566-7159 | GU368915 | ||||
BEN-35 | 4458-7162 | GU368902 | ||||
Wauchope, NSW | Wauchope rabbitry | 2009 | WAU-1 | 4458-7162 | GU368901 |
ACT, Australian Capital Territory; NSW, New South Wales, VIC, Victoria.
Nucleotide positions are numbered in reference to the previously published RCV-A1 Michelago sequence.