Skip to main content
. 2010 Oct 13;6(11):3285–3292. doi: 10.1021/ct100322t

Table 2. Free Energies for the Decoupling of Oseltamivir from the Neuraminidase Active Site As Calculated with cMD and Selective aMD for Varying Equilibration and Sampling Periods.

simulation type equilibration time sampling time free energy (kcal/mol)
cMD 1 ns 1 ns 71.0 ± 1.4
    2 ns 70.5 ± 1.5
    3 ns 69.5 ± 1.6
    4 ns 68.4 ± 1.3
  2 ns 1 ns 69.6 ± 2.2
    2 ns 68.5 ± 2.0
    3 ns 67.6 ± 1.5
  3 ns 1 ns 66.8 ± 1.8
    2 ns 66.9 ± 1.2
aMD 250 ps 500 ps 70.5 ± 1.4
    750 ps 69.4 ± 1.0
    1000 ps 69.2 ± 1.2
    1250 ps 68.7 ± 1.1
  500 ps 500 ps 69.2 ± 1.2
    750 ps 69.0 ± 1.1
    1000 ps 68.3 ± 1.2
  750 ps 500 ps 67.9 ± 1.4
    750 ps 67.3 ± 1.5