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. 2010 Oct 6;11:497. doi: 10.1186/1471-2105-11-497

Table 1.

Annotations enriched in differentially coexpressed modules

Module Category Subcategory Expected   Observed fdr
Black
KEGG
Metabolism of xenobiotics by cytochrome P450
1.367
  12
<0.001
KEGG
Metabolic pathways
22.494
  40
<0.001
GO
Glutathione transferase activity
0.364
  9
<0.001
Blue
KEGG
Lysosome
3.373
  12
0.008
KEGG
Metabolic pathways
31.541
  48
0.026
GO
Mitochondrion
35.764
  67
<0.001
Brown
GO
Intracellular transport
8.481
  22
0.038
Green
GO
Mitochondrion
10.234
  26
0.003
GO
Oxidation reduction
4.015
  15
0.003
Orange
GO
Xenobiotic metabolic process
0.079
  5
<0.001
Purple
No significant enrichment
       
Red
KEGG
Endometrial cancer
0.201
  3
0.015
Yellow KEGG
Pancreatic cancer
3.344
  14
<0.001
KEGG
Renal cell carcinoma
3.702
  10
0.043
KEGG
Pathways in cancer
14.75
  27
0.022
GO
Protein localization
33.676
  64
<0.001
GO
Melanosome
2.995
  11
0.009
GO
Cell projection
33.886
  59
0.002
GO Small GTPase mediated signal transduction 14.342   31 0.003

Selected annotations enriched among the genes of each differentially coexpressed modules and associated false discovery rates (fdr). The over-representation analysis was conducted using GeneTrail. The complete results are available in Additional File 3.