Table 1.
Module | Category | Subcategory | Expected | Observed | fdr | |
---|---|---|---|---|---|---|
Black |
KEGG |
Metabolism of xenobiotics by cytochrome P450 |
1.367 |
12 |
<0.001 |
|
KEGG |
Metabolic pathways |
22.494 |
40 |
<0.001 |
||
GO |
Glutathione transferase activity |
0.364 |
9 |
<0.001 |
||
Blue |
KEGG |
Lysosome |
3.373 |
12 |
0.008 |
|
KEGG |
Metabolic pathways |
31.541 |
48 |
0.026 |
||
GO |
Mitochondrion |
35.764 |
67 |
<0.001 |
||
Brown |
GO |
Intracellular transport |
8.481 |
22 |
0.038 |
|
Green |
GO |
Mitochondrion |
10.234 |
26 |
0.003 |
|
GO |
Oxidation reduction |
4.015 |
15 |
0.003 |
||
Orange |
GO |
Xenobiotic metabolic process |
0.079 |
5 |
<0.001 |
|
Purple |
No significant enrichment |
|||||
Red |
KEGG |
Endometrial cancer |
0.201 |
3 |
0.015 |
|
Yellow | KEGG |
Pancreatic cancer |
3.344 |
14 |
<0.001 |
|
KEGG |
Renal cell carcinoma |
3.702 |
10 |
0.043 |
||
KEGG |
Pathways in cancer |
14.75 |
27 |
0.022 |
||
GO |
Protein localization |
33.676 |
64 |
<0.001 |
||
GO |
Melanosome |
2.995 |
11 |
0.009 |
||
GO |
Cell projection |
33.886 |
59 |
0.002 |
||
GO | Small GTPase mediated signal transduction | 14.342 | 31 | 0.003 |
Selected annotations enriched among the genes of each differentially coexpressed modules and associated false discovery rates (fdr). The over-representation analysis was conducted using GeneTrail. The complete results are available in Additional File 3.