. Author manuscript; available in PMC: 2010 Nov 12.

Published in final edited form as: Ann Stat. 2010 Nov 1;38(5):2723–2750. doi: 10.1214/10-AOS802

Table 9.

Comparison of the number of significantly differentially expressed genes using permutation SIMEX

		p < 0.05		p < 0.01		p < 0.005		p < 0.001
		t-test	z-test	t-test	z-test	t-test	z-test	t-test	z-test
Agilent 1	FC>1.5	12692	12820	12464	12820	12313	12820	11744	12820
	FC>2	8802	8879	8654	8879	8556	8879	8231	8879
	FC>4	3493	3493	3431	3493	3376	3493	3231	3493

Agilent 2	FC>1.5	12282	12721	11217	12721	10502	12721	8270	12721
	FC>2	8644	8878	7908	8878	7452	8878	6125	8878
	FC>4	3600	3649	3188	3649	2964	3649	2422	3649

Agilent 3	FC>1.5	12502	12760	11994	12760	11694	12760	10788	12760
	FC>2	8689	8836	8344	8836	8150	8836	7591	8836
	FC>4	3585	3603	3378	3603	3278	3603	2985	3603