Table 1. Genes required for surviving Spc110 cleavage.
Gene | Role | Synthetic Growth Defect in W303a |
Mitosis | ||
CTF19 | Kinetochore | |
CIK1 b | MT motor (kinesin-14 accessory) | Yes |
KAR3 b | MT motor (kinesin-14) | Yes |
VIK1 b | MT motor (kinesin-14 accessory) | Yes |
JNM1 b | MT motor (dynactin complex) | Yes |
DYN3 b | MT motor (dynein inter. light ch.) | Yes |
CLB2 | mitotic cyclin | |
BFA1 | mitotic exit | |
BUB3 | mitotic spindle checkpoint | |
MAD1 b | mitotic spindle checkpoint | Yes |
MAD3 | mitotic spindle checkpoint | |
MAD2 b | mitotic spindle checkpoint | Yes |
CTF18 | sister chromatid cohesion | |
CTF8 | sister chromatid cohesion | |
CHL1 | sister chromatid cohesion | |
Protein Modification | ||
RTS1 b | PP2A B' subunit | Yes |
NCS2 b | Urmylation | Yes |
PPM1 b | PP2A methyltransferase | No |
UBC4 b | Ubiquitination (E2) | Yes |
UBC7 | Ubiquitination (E2) | |
Nuclear Pore | ||
SAC3 b | nuclear pore | Yes |
POM152 b | nuclear pore | Yes |
NUP60 b | nuclear pore | Yes |
Chromatin Remodeling | ||
HTZ1 | Histone | |
SIN3 | Histone deacetylase | |
DOT1 b | Histone methyltransferase | No |
EAF3 | Histone acetyltransferase | |
VPS71 | Part of Swi/Snf remodeling | |
mRNA Levels | ||
LSM6 | mRNA catabolism | |
NMD2 | mRNA catabolism | |
SKI3 | mRNA catabolism | |
LSM7 b | mRNA catabolism | No |
SKI7 | mRNA catabolism | |
UPF3 | mRNA catabolism | |
PAT1 | mRNA catabolism | |
PUS7 | mRNA splicing | |
HCM1 b | transcriptional activator | Yes |
Other | ||
SLA1 | Endocytosis | |
YOR052C | Unknown (zinc-finger protein) |
The top 36 candidates identified in the SGA screen are shown in this table. Deletion of each gene caused decreased growth in the presence of Spc110 cleavage with a p-value <2.17×10−3.
Each of these genes was deleted in the W303 genetic background and the synthetic growth defect verified.
Chosen for further study.