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. 2010 Nov 17;99(10):3420–3429. doi: 10.1016/j.bpj.2010.09.040

Figure 2.

Figure 2

Distribution of LID-CORE (x axis) and NMPbind-CORE (y axis) distances observed in four 100 ns trajectories of all-atom MD simulations: (green/bottom and right) t0-closed–apo, (red/top right) t0-open–apo, (blue/top left and top right) t0-open–SB, and (black) t0-closed–SB. See text for the definition of all-atom MD simulations. The definitions of LID-CORE and NMPbind-CORE distances are described in Fig. 1. The corresponding distances and PDB codes of several crystal structures of AK and AK variants are shown.