Table 1.

Patient Characteristics and HIV-1 Subtype Information^a

							HIV-1 subtype
Patient ID	Gender	Profession	Year sampling	Probable year of infection	Probable location of HIV infection	Sample source	env	pol
MAL01	F	Housewife	2003	1998	Bamako, Mali	PBMC provirus	CRF02
MAL04	F	Housewife	2003	1998	Bamako, Mali	PBMC provirus	CRF02
MAL06	M	Driver	2003	1998	Bamako, Mali	PBMC provirus	A3
MAL07	F	Housewife	2003	1998	Bamako, Mali	PBMC provirus	CRF02
MAL12	F	Housewife	2003	1998	Bamako, Mali	PBMC provirus	CRF02
MAL13	F	Trader	2003	1998	Bamako, Mali	PBMC provirus	CRF02
MAL14	F	Trader	2003	1998	Côte d'Ivoire	PBMC provirus	CRF09
MAL019	M	Trader	2003	1999	Bamako, Mali	PBMC provirus	CRF06
MAL125	F	Artist	2003	1999	Bamako, Mali	PBMC provirus	CRF02
MAL127	F	Housewife	2003	1999	Bamako, Mali	Plasma virus	CRF02
MAL144	F	Housewife	2003	1999	Bamako, Mali	PBMC provirus	CRF02
MAL152	M	Manager	2003	1999	Bamako, Mali	Plasma virus	CRF02
MAL154	F	Housewife	2003	1999	Bamako, Mali	PBMC provirus	A3
MAL155	M	Carpenter	2003	2000	n.a.	Plasma virus	CRF02
MAL162	n.a.	n.a.	2003	n.a.	n.a.	Plasma virus	CRF02
MAL164	n.a.	n.a.	2003	n.a.	n.a.	Plasma virus	CRF02
MAL08	F	Housewife	2004	2004	Bamako, Mali	Plasma virus	CRF02	CRF02
MAL27	M	Military	2004	2004	Bamako, Mali	Plasma virus	CRF02	A3
MAL29	M	Carpenter	2004	2003	Bamako, Mali	Plasma virus	CRF09	CRF09
MAL30	F	Housewife	2004	2004	Bamako, Mali	Plasma virus	A3	CRF02
MAL40	F	Nurse	2004	2004	Bamako, Mali	Plasma virus	CRF02	CRF02
MAL41	F	Nurse	2004	2004	Bamako, Mali	Plasma virus	CRF02	CRF02
MAL56	F	Housewife	2005	n.a.	Bamako, Mali	Plasma virus	CRF06	n.a.

^aThe HIV-1 subtype/CRF designation of env and pol genes was determined based on the nearest reference strain found by the neighbor-joining tree method. n.a., not available.