Table 2.
Classification by Subtype
| Subtype | Reference strain | Accession no. | Country code | Country |
|---|---|---|---|---|
| A1 | Q23 | AF004885 | KE | Kenya |
| A1 | SE7253 | AF069670 | SE | Sweden |
| A1 | 92UG037 | U51190 | UG | Uganda |
| A1 | 98UG57136 | AF484509 | UG | Uganda |
| A2 | 97CDKTB48 | AF286238 | CD | Congo |
| A2 | 94CY017 | AF286237 | CY | Cyprus |
| A3 | DDJ360 | AY521630 | SE | Sweden |
| A3 | DDI579 | AY521629 | SE | Sweden |
| A3/02 | DDJ362 | AY521632 | SE | Sweden |
| A3/02 | DDJ364 | AY521633 | SE | Sweden |
| B | HXB2 | K03455 | FR | France |
| B | 671_00T36 | AY423387 | NL | Netherlands |
| B | BK132 | AY173951 | TH | Thailand |
| B | 1058_11 | AY331295 | US | USA |
| C | BR025-d | U52953 | BR | Brazil |
| C | ETH2220 | U46016 | ET | Ethiopia |
| C | 95IN21068 | AF067155 | IN | India |
| C | SK164B1 | AY772699 | ZA | South Africa |
| D | ELI | K03454 | CD | Congo |
| D | 4412HAL | AY371157 | CM | Cameroon |
| D | A280 | AY253311 | TZ | Tanzania |
| D | 94UG114 | U88824 | UG | Uganda |
| F1 | VI850 | AF077336 | BE | Belgium |
| F1 | 93BR020_1 | AF005494 | BR | Brazil |
| F1 | FIN9363 | AF075703 | FI | Finland |
| F1 | MP411 | AJ249238 | FR | France |
| F2 | 0016BBY | AY371158 | CM | Cameroon |
| F2 | MP255 | AJ249236 | CM | Cameroon |
| F2 | MP257 | AJ249237 | CM | Cameroon |
| F2 | CM53657 | AF377956 | CM | Cameroon |
| G | DRCBL | AF084936 | BE | Belgium |
| G | HH8793 | AF061641 | KE | Kenya |
| G | 92NG083 | U88826 | NG | Nigeria |
| G | SE6165 | AF061642 | SE | Sweden |
| H | VI991 | AF190127 | BE | Belgium |
| H | VI997 | AF190128 | BE | Belgium |
| H | 90_056 | AF005496 | CF | Central African Republic |
| J | SE7887 | AF082394 | SE | Sweden |
| J | SE7022 | AF082395 | SE | Sweden |
| K | EQTB11C | AJ249235 | CD | Congo |
| K | MP535 | AJ249239 | CM | Cameroon |
| 01_AE | CM240 | U54771 | TH | Thailand |
| 01_AE | 90CF11697 | AF197340 | CF | Central African Republic |
| 01_AE | 90CF402 | U51188 | CF | Central African Republic |
| 01_AE | 90CF4071 | AF197341 | CF | Central African Republic |
| 02_AG | IBNG | L39106 | NG | Nigeria |
| 02_AG | DJ263 | AF063223 | FR (DJ) | Djibouti |
| 02_AG | DJ264 | AF063224 | FR (DJ) | Djibouti |
| 02_AG | SE7812 | AF107770 | SE | Sweden |
| 03_AB | KAL153_2 | AF193276 | RU | Russian Federation |
| 03_AB | 98BY10443 | AF414006 | BY | Belarus |
| 03_AB | RU98001 | AF193277 | RU | Russian Federation |
| 04_cpx | CY032 | AF049337 | CY | Cyprus |
| 04_cpx | 97PVCH | AF119820 | GR | Greece |
| 04_cpx | 97PVMY | AF119819 | GR | Greece |
| 05_DF | VI1310 | AF193253 | BE | Belgium |
| 05_DF | VI961 | AF076998 | BE | Belgium |
| 05_DF | X492 | AY227107 | ES | Spain |
| 06_cpx | BFP90 | AF064699 | AU | Australia |
| 06_cpx | 95ML84 | AJ245481 | ML | Mali |
| 06_cpx | 95ML127 | AJ288982 | ML | Mali |
| 06_cpx | 97SE1078 | AJ288981 | SN | Senegal |
| 07_BC | CN54 | AX149771 | CN | China |
| 07_BC | 97CN001 | AF286226 | CN | China |
| 07_BC | 98CN009 | AF286230 | CN | China |
| 07_BC | CNGL179 | AF503396 | CN | China |
| 08_BC | GX_6F | AY008715 | CN | China |
| 08_BC | 98CN006 | AF286229 | CN | China |
| 09_cpx | 96GH2911 | AY093605 | GH | Ghana |
| 09_cpx | 96SN1795 | AY093603 | SN | Senegal |
| 09_cpx | 99DE4057 | AY093607 | US | USA |
| 09_cpx | 00IC_10092 | AJ866553 | CI | Côte d'Ivoire |
| 10_CD | BF061 (TZBF061) | AF289548 | TZ | Tanzania |
| 10_CD | BF071 | AF289549 | TZ | Tanzania |
| 10_CD | BF110 | AF289550 | TZ | Tanzania |
| 11_cpx | GR17 | AF179368 | GR | Greece |
| 11_cpx | 0186ND | AY371149 | CM | Cameroon |
| 11_cpx | 1816 | AF492624 | CM | Cameroon |
| 11_cpx | MP1298 | AJ291719 | FR | France |
| 12_BF | ARMA159 | AF385936 | AR | Argentina |
| 12_BF | X1241 | AY536238 | ES | Spain |
| 12_BF | URTR17 | AY037272 | UY | Uruguay |
| 13_cpx | 1849 (96CM_1849) | AF460972 | CM | Cameroon |
| 13_cpx | 3226MN | AY371154 | CM | Cameroon |
| 13_cpx | 4164 | AF460974 | CM | Cameroon |
| 14_BG | X397 | AF423756 | ES | Spain |
| 14_BG | X475 | AF423758 | ES | Spain |
| 14_BG | X605 | AF450096 | ES | Spain |
| 15_01B | MU2079 | AF516184 | TH | Thailand |
| 15_01B | OUR1331 | AF529572 | TH | Thailand |
| 15_01B | R2399 | AF530576 | TH | Thailand |
| 16_A2D | 97KR004 | AF286239 | KR | Korea |
| 18_cpx | CM53379 | AF377959 | CM | Cameroon |
| 18_cpx | CU76 | AY586540 | CU | Cuba |
| 19_cpx | CU38 | AY588970 | CU | Cuba |
| 19_cpx | CU7 | AY894994 | CU | Cuba |
| O | ANT70 | L20587 | BE | Belgium |
| CRF17_BF | ARMA038 | AY037281 | AR | Argentina |
| CRF20_BG | CB228 | AY900577 (gag-pol) | CU | Cuba |
| CRF21_A2D | 99KE_KER2003 | AF457051 (KER2003) | KE | Kenya |
| CRF22_01A1 | CM53122 | AY037284S2 | CM | Cameroon |
| CRF23_BG | CB118 | AY900571 | CU | Cuba |
| CRF24_BG | CB378 | AY900574 | CU | Cuba |
| CRF25_cpx | 02CM_1918LE | AY371169 (1918LE) | CM | Cameroon |
| CRF26_AU | Pending | |||
| CRF27 | Pending | |||
| CRF28_BF | BREPM12609 | DQ085873 | BR | Brazil |
| CRF29_BF | BREPM16704 | DQ085876 | BR | Brazil |
| CRF30_0206 | 00NE36 | AJ508597 (NE36) | NE | Niger |
| CRF31_BC | 04BR142 | AY727527 | BR | Brazil |
| CRF32_06A1 | EE0369 | AY535660 | EE | Estonia |
| CRF33_01B | 05MYKL007 | DQ366659 | MY | Malaysia |
| CRF34_01B | Pending | TH | Thailand | |
| CRF35_AD | AF026 | EF158040 | AF | Afghanistan |
| CRF36_cpx | 00CMNYU830 | EF087994 | CM | Cameroon |
| CRF37_cpx | 00CMNYU926 | EF116594 | CM | Cameroon |