Table 3.
Pol and env Trees
| Pol tree |
env tree |
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Subtype | Sequence name | Accession no. | Country code | Country | Subtype | Sequence name | Accession no. | Country code | Country |
| A1 | Q23 | AF004885 | KE | Kenya | A1 | Q23 | AF004885 | KE | Kenya |
| A1 | SE7253 | AF069670 | SE | Sweden | A1 | SE7253 | AF069670 | SE | Sweden |
| A1 | U455 | M62320 | UG | Uganda | A1 | 98UG57136 | AF484509 | UG | Uganda |
| A1 | 92UG037 | U51190 | UG | Uganda | A1 | 92UG037 | U51190 | UG | Uganda |
| A2 | 97CDKTB48 | AF286238 | CD | Congo | A2 | 97CDKTB48 | AF286238 | CD | Congo |
| A2 | 94CY017 | AF286237 | CY | Cyprus | A2 | 94CY017 | AF286237 | CY | Cyprus |
| A3 | DDJ360 | AY521630 | SE | Sweden | A3 | DDJ360 | AY521630 | SE | Sweden |
| A3 | DD1579 | AY521629 | SE | Sweden | A3 | DD1579 | AY521629 | SE | Sweden |
| A3/02 | DDJ362 | AY521632 | SE | Sweden | A3/02 | DDJ362 | AY521632 | SE | Sweden |
| A3/02 | DDJ364 | AY521633 | SE | Sweden | A3/02 | DDJ364 | AY521633 | SE | Sweden |
| B | HXB2 | K03455 | FR | France | B | HXB2 | K03455 | FR | France |
| B | RF | M17451 | US | USA | B | 671_00T36 | AY423387 | NL | Netherlands |
| B | JFRL | U63632 | Us | USA | B | BK132 | AY173951 | TH | Thailand |
| B | WEAU160 | U21135 | US | USA | B | 1058_11 | AY331295 | US | USA |
| C | BR025-d | U52953 | BR | Brazil | C | BR025-d | U52953 | BR | Brazil |
| C | ETH2220 | U46016 | ET | Ethiopia | C | ETH2220 | U46016 | ET | Ethiopia |
| C | 96BW0502 | AF110967 | BW | Botswana | C | 95IN21068 | AF067155 | IN | India |
| C | 95IN21068 | AF067155 | IN | India | |||||
| D | ELI | K03454 | CD | Congo | D | ELI | K03454 | CD | Congo |
| D | NDK | M27323 | CD | Congo | D | 4412HAL | AY371157 | CM | Cameroon |
| D | 84ZR085 | U88822 | CD | Congo | D | A280 | AY253311 | TZ | Tanzania |
| D | 94UG114 | U88824 | UG | Uganda | D | 94UG114 | U88824 | UG | Uganda |
| F1 | VI850 | AF077336 | BE | Belgium | F1 | VI850 | AF077336 | BE | Belgium |
| F1 | 93BR020_1 | AF005494 | BR | Brazil | F1 | 93BR020_1 | AF005494 | BR | Brazil |
| F1 | FIN9363 | AF075703 | FI | Finland | F1 | FIN9363 | AF075703 | FI | Finland |
| F1 | MP411 | AJ249238 | FR | France | F1 | MP411 | AJ249238 | FR | France |
| F2 | MP255 | AJ249236 | CM | Cameroon | F2 | MP255 | AJ249236 | CM | Cameroon |
| F2 | MP257 | AJ249237 | CM | Cameroon | F2 | MP257 | AJ249237 | CM | Cameroon |
| G | DRCBL | AF084936 | BE | Belgium | G | DRCBL | AF084936 | BE | Belgium |
| G | HH8793 | AF061641 | KE | Kenya | G | HH8793 | AF061641 | KE | Kenya |
| G | 92NG083 | U88826 | NG | Nigeria | G | 92NG083 | U88826 | NG | Nigeria |
| G | SE6165 | AF061642 | SE | Sweden | G | SE6165 | AF061642 | SE | Sweden |
| H | VI991 | AF190127 | BE | Belgium | H | VI991 | AF190127 | BE | Belgium |
| H | VI997 | AF190128 | BE | Belgium | H | VI997 | AF190128 | BE | Belgium |
| H | 90_056 | AF005496 | CF | Central African Republic | H | 90_056 | AF005496 | CF | Central African Republic |
| J | SE7887 | AF082394 | SE | Sweden | J | SE7887 | AF082394 | SE | Sweden |
| J | SE7022 | AF082395 | SE | Sweden | J | SE7022 | AF082395 | SE | Sweden |
| K | EQTB11C | AJ249235 | CD | Congo | K | EQTB11C | AJ249235 | CD | Congo |
| K | MP535 | AJ249239 | CM | Cameroon | K | MP535 | AJ249239 | CM | Cameroon |
| 01_AE | 90CF11697 | AF197340 | CF | Central African Republic | 01_AE | 90CF11697 | AF197340 | CF | Central African Republic |
| 01_AE | 90CF402 | U51188 | CF | Central African Republic | 01_AE | 90CF402 | U51188 | CF | Central African Republic |
| 01_AE | 90CF4071 | AF197341 | CF | Central African Republic | 01_AE | 90CF4071 | AF197341 | CF | Central African Republic |
| 01 AE | CM240 | U54771 | TH | Thailand | 01_AE | CM240 | U54771 | TH | Thailand |
| 02_AG | MP807 | AJ286133 | CM | Cameroon | 02_AG | DJ263 | AF063223 | FR (DJ) | Djibouti |
| 02_AG | DJ264 | AF063224 | FR (DJ) | Djibouti | 02_AG | DJ264 | AF063224 | FR (DJ) | Djibouti |
| 02_AG | IBNG | L39106 | NG | Nigeria | 02_AG | IBNG | L39106 | NG | Nigeria |
| 02_AG | SE7812 | AF107770 | SE | Sweden | 02_AG | SE7812 | AF107770 | SE | Sweden |
| 06_cpx | BFP90 | AF064699 | AU | Australia | 06_cpx | BFP90 | AF064699 | AU | Australia |
| 06_cpx | 95ML127 | AJ288982 | ML | Mali | 06_cpx | 95ML127 | AJ288982 | ML | Mali |
| 06_cpx | 95ML84 | AJ245481 | ML | Mali | 06_cpx | 95ML84 | AJ245481 | ML | Mali |
| 06_cpx | 97SE1078 | AJ288981 | SN | Senegal | 06_cpx | 97SE1078 | AJ288981 | SN | Senegal |
| 09_cpx | 96SN1795 | AY093603 | SN | Senegal | 09_cpx | 96SN1795 | AY093603 | SN | Senegal |
| 09_cpx | 95SN7808 | AY093604 | SN | Senegal | 09_cpx | 95SN7808 | AY093604 | SN | Senegal |
| 09_cpx | 96GH2911 | AY093605 | GH | Ghana | 09_cpx | 96GH2911 | AY093605 | GH | Ghana |
| 09_cpx | 99DE4057 | AY093607 | US | USA | 09_cpx | 99DE4057 | AY093607 | US | USA |
| 09_cpx | 00IC_10092 | AJ866553 | CI | Côte d'lvoire | 09_cpx | 00IC_10092 | AJ866553 | CI | Côte d'lvoire |