Table II.
HRs of single SNPs and RCC survival
Gene | SNP | Allelesa | Minor allele frequency (dead/alive) | Best-fitting genetic model (All histology types) |
Best-fitting genetic model (Clear cell carcinoma) |
||||
Model | HR (95% CI)b | P-valuec | Model | HR (95% CI)b | P-value | ||||
Biogenesis pathway | |||||||||
DROSHA | rs6877842 | G/C | 0.15/0.16 | DOM | 0.79 (0.40–1.55) | 0.494 | DOM | 0.91 (0.43–1.92) | 0.811 |
rs10719 | C/T | 0.26/0.26 | DOM | 0.68 (0.36–1.30) | 0.246 | DOM | 0.59 (0.29–1.21) | 0.151 | |
DGCR8 | rs417309 | G/A | 0.05/0.07 | DOM | 1.04 (0.42–2.54) | 0.935 | DOM | 1.20 (0.48–2.99) | 0.694 |
rs3757 | G/A | 0.20/0.24 | REC | 0.44 (0.10–1.91) | 0.273 | DOM | 0.91 (0.46–1.77) | 0.771 | |
rs1640299 | G/T | 0.50/0.48 | DOM | 1.55 (0.82–2.95) | 0.179 | ADD | 1.21 (0.77–1.89) | 0.406 | |
XPO5 | rs11077 | A/C | 0.52/0.42 | ADD | 1.37 (0.91–2.05) | 0.130 | DOM | 1.85 (0.89–3.83) | 0.099 |
RAN | rs14035 | C/T | 0.29/0.28 | ADD | 1.25 (0.80–1.94) | 0.324 | REC | 1.72 (0.62–4.79) | 0.302 |
DICER | rs3742330 | A/G | 0.08/0.07 | DOM | 2.17 (0.98–4.79) | 0.055 | DOM | 1.85 (0.78–4.39) | 0.164 |
rs13078 | T/A | 0.25/0.17 | ADD | 1.47 (0.96–2.27) | 0.080 | ADD | 1.63 (0.98–2.72) | 0.061 | |
TRBP | rs784567 | C/T | 0.48/0.39 | DOM | 1.54 (0.79–2.99) | 0.204 | ADD | 1.19 (0.79–1.80) | 0.415 |
AGO1 | rs636832 | G/A | 0.13/0.15 | DOM | 1.16 ( 0.58–2.29) | 0.678 | DOM | 0.96 (0.43–2.11) | 0.912 |
rs595961 | A/G | 0.18/0.22 | REC | 1.63 (0.40–6.65) | 0.494 | ADD | 0.88 (0.47–1.66) | 0.699 | |
AGO2 | rs4961280 | C/A | 0.20/0.19 | DOM | 1.15 ( 0.63–2.10) | 0.644 | ADD | 1.14 (0.66–1.96) | 0.637 |
GEMIN4 | rs910924 | C/T | 0.22/0.23 | DOM | 2.04 (1.11–3.76) | 0.022 | DOM | 2.27 (1.13–4.57) | 0.021 |
rs2740348 | G/C | 0.16/0.15 | DOM | 1.59 (0.87–2.90) | 0.132 | DOM | 1.39 (0.72–2.70) | 0.325 | |
rs7813 | T/C | 0.37/0.36 | ADD | 1.74 (1.15–2.62) | 0.009 | ADD | 1.71 (1.08–2.70) | 0.021 | |
rs910925 | G/C | 0.37/0.37 | ADD | 1.74 (1.15–2.62) | 0.009 | ADD | 1.71 (1.08–2.70) | 0.021 | |
rs3744741 | C/T | 0.16/0.18 | DOM | 0.39 (0.19–0.77) | 0.007 | DOM | 0.40 (0.18–0.85) | 0.018 | |
rs1062923 | T/C | 0.19/0.16 | DOM | 0.75 (0.40–1.42) | 0.379 | DOM | 0.83 (0.41–1.68) | 0.604 | |
rs4968104 | T/A | 0.21/0.21 | DOM | 1.88 (1.03–3.42) | 0.040 | DOM | 2.01 (1.02–3.98) | 0.044 | |
GEMIN3 | rs197414 | C/A | 0.12/0.14 | DOM | 0.59 (0.30–1.17) | 0.134 | DOM | 0.62 (0.30–1.26) | 0.184 |
rs197388 | T/A | 0.21/0.21 | ADD | 0.88 (0.54–1.43) | 0.611 | REC | 0.28 (0.03–2.59) | 0.259 | |
rs197412 | T/C | 0.40/0.45 | ADD | 0.70 (0.47–1.05) | 0.087 | ADD | 0.62 (0.40–0.98) | 0.041 | |
HIWI | rs1106042 | G/A | 0.02/0.06 | DOM | 0.49 (0.11–2.12) | 0.341 | DOM | 0.48 (0.11–2.10) | 0.333 |
Pre-miRNA | |||||||||
mir146a | rs2910164 | G/C | 0.25/0.27 | DOM | 0.77 (0.43–1.40) | 0.396 | DOM | 0.56 (0.29–1.08) | 0.08 |
mir196a-2 | rs11614913 | C/T | 0.34/0.37 | REC | 1.44 (0.66–3.16) | 0.359 | DOM | 0.80 (0.43–1.50) | 0.481 |
mir423 | rs6505162 | C/A | 0.49/0.46 | REC | 0.95 (0.47–1.91) | 0.886 | REC | 0.84 (0.39–1.81) | 0.647 |
mir492 | rs2289030 | C/G | 0.06/0.06 | DOM | 1.49 (0.58–3.82) | 0.407 | DOM | 1.40 (0.51–3.87) | 0.516 |
mir604 | rs2368392 | C/T | 0.21/0.27 | ADD | 0.73 (0.43–1.24) | 0.247 | ADD | 0.70 (0.40–1.23) | 0.217 |
mir608 | rs4919510 | C/G | 0.25/0.21 | ADD | 1.61 (1.00–2.57) | 0.048 | ADD | 1.64 (0.96–2.79) | 0.071 |
mir631 | rs5745925 | CT/— | 0.10/0.09 | DOM | 0.77 (0.37–1.59) | 0.481 | DOM | 0.65 (0.27–1.57) | 0.335 |
Pri-miRNA | |||||||||
let7f-2 | rs17276588 | G/A | 0.04/0.03 | DOM | 0.33 (0.09–1.15) | 0.081 | DOM | 0.41 (0.12–1.47) | 0.172 |
mir26a-1 | rs7372209 | C/T | 0.37/0.28 | DOM | 1.51 (0.86–2.66) | 0.154 | DOM | 1.33 (0.70–2.50) | 0.384 |
mir30a | rs1358379 | A/G | 0.06/0.03 | DOM | 1.34 (0.59–3.07) | 0.482 | DOM | 1.19 (0.45–3.17) | 0.721 |
mir30c-1 | rs16827546 | C/T | 0.02/0.04 | DOM | 0.26 (0.03–2.11) | 0.208 | N/A | N/A | N/A |
mir100 | rs1834306 | C/T | 0.47/0.46 | REC | 0.78 (0.38–1.59) | 0.491 | REC | 0.81 (0.37–1.77) | 0.597 |
mir124-1 | rs531564 | C/G | 0.16/0.12 | DOM | 1.57 (0.85–2.88) | 0.150 | DOM | 1.42 (0.72–2.81) | 0.307 |
mir219-1 | rs107822 | G/A | 0.20/0.26 | DOM | 0.75 (0.40–1.42) | 0.380 | ADD | 0.70 (0.36–1.37) | 0.296 |
rs213210 | T/C | 0.06/0.07 | DOM | 0.88 (0.34–2.28) | 0.790 | DOM | 0.70 (0.24–2.03) | 0.511 | |
mir373 | rs12983273 | C/T | 0.15/0.14 | DOM | 1.75 (0.96–3.18) | 0.066 | DOM | 2.04 (1.04–3.98) | 0.038 |
rs10425222 | C/A | 0.08/0.05 | DOM | 2.04 (0.89–4.68) | 0.09 | DOM | 1.94 (0.67–5.62) | 0.220 |
Major/minor alleles.
Adjusted for age, sex, ethnicity, smoking status, stage, grade and treatments. P-value < 0.05 was in bold and used in the unfavorable genotype analysis.
Underlined P-values remained significant after false discovery rate adjustment at 0.05 level.