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. 2010 Aug 23;31(10):1805–1812. doi: 10.1093/carcin/bgq168

Table II.

HRs of single SNPs and RCC survival

Gene SNP Allelesa Minor allele frequency (dead/alive) Best-fitting genetic model (All histology types)
Best-fitting genetic model (Clear cell carcinoma)
Model HR (95% CI)b P-valuec Model HR (95% CI)b P-value
Biogenesis pathway
    DROSHA rs6877842 G/C 0.15/0.16 DOM 0.79 (0.40–1.55) 0.494 DOM 0.91 (0.43–1.92) 0.811
rs10719 C/T 0.26/0.26 DOM 0.68 (0.36–1.30) 0.246 DOM 0.59 (0.29–1.21) 0.151
    DGCR8 rs417309 G/A 0.05/0.07 DOM 1.04 (0.42–2.54) 0.935 DOM 1.20 (0.48–2.99) 0.694
rs3757 G/A 0.20/0.24 REC 0.44 (0.10–1.91) 0.273 DOM 0.91 (0.46–1.77) 0.771
rs1640299 G/T 0.50/0.48 DOM 1.55 (0.82–2.95) 0.179 ADD 1.21 (0.77–1.89) 0.406
    XPO5 rs11077 A/C 0.52/0.42 ADD 1.37 (0.91–2.05) 0.130 DOM 1.85 (0.89–3.83) 0.099
    RAN rs14035 C/T 0.29/0.28 ADD 1.25 (0.80–1.94) 0.324 REC 1.72 (0.62–4.79) 0.302
    DICER rs3742330 A/G 0.08/0.07 DOM 2.17 (0.98–4.79) 0.055 DOM 1.85 (0.78–4.39) 0.164
rs13078 T/A 0.25/0.17 ADD 1.47 (0.96–2.27) 0.080 ADD 1.63 (0.98–2.72) 0.061
    TRBP rs784567 C/T 0.48/0.39 DOM 1.54 (0.79–2.99) 0.204 ADD 1.19 (0.79–1.80) 0.415
    AGO1 rs636832 G/A 0.13/0.15 DOM 1.16 ( 0.58–2.29) 0.678 DOM 0.96 (0.43–2.11) 0.912
rs595961 A/G 0.18/0.22 REC 1.63 (0.40–6.65) 0.494 ADD 0.88 (0.47–1.66) 0.699
    AGO2 rs4961280 C/A 0.20/0.19 DOM 1.15 ( 0.63–2.10) 0.644 ADD 1.14 (0.66–1.96) 0.637
    GEMIN4 rs910924 C/T 0.22/0.23 DOM 2.04 (1.113.76) 0.022 DOM 2.27 (1.134.57) 0.021
rs2740348 G/C 0.16/0.15 DOM 1.59 (0.87–2.90) 0.132 DOM 1.39 (0.72–2.70) 0.325
rs7813 T/C 0.37/0.36 ADD 1.74 (1.152.62) 0.009 ADD 1.71 (1.082.70) 0.021
rs910925 G/C 0.37/0.37 ADD 1.74 (1.152.62) 0.009 ADD 1.71 (1.082.70) 0.021
rs3744741 C/T 0.16/0.18 DOM 0.39 (0.190.77) 0.007 DOM 0.40 (0.180.85) 0.018
rs1062923 T/C 0.19/0.16 DOM 0.75 (0.40–1.42) 0.379 DOM 0.83 (0.41–1.68) 0.604
rs4968104 T/A 0.21/0.21 DOM 1.88 (1.033.42) 0.040 DOM 2.01 (1.023.98) 0.044
    GEMIN3 rs197414 C/A 0.12/0.14 DOM 0.59 (0.30–1.17) 0.134 DOM 0.62 (0.30–1.26) 0.184
rs197388 T/A 0.21/0.21 ADD 0.88 (0.54–1.43) 0.611 REC 0.28 (0.03–2.59) 0.259
rs197412 T/C 0.40/0.45 ADD 0.70 (0.47–1.05) 0.087 ADD 0.62 (0.400.98) 0.041
    HIWI rs1106042 G/A 0.02/0.06 DOM 0.49 (0.11–2.12) 0.341 DOM 0.48 (0.11–2.10) 0.333
Pre-miRNA
    mir146a rs2910164 G/C 0.25/0.27 DOM 0.77 (0.43–1.40) 0.396 DOM 0.56 (0.29–1.08) 0.08
    mir196a-2 rs11614913 C/T 0.34/0.37 REC 1.44 (0.66–3.16) 0.359 DOM 0.80 (0.43–1.50) 0.481
    mir423 rs6505162 C/A 0.49/0.46 REC 0.95 (0.47–1.91) 0.886 REC 0.84 (0.39–1.81) 0.647
    mir492 rs2289030 C/G 0.06/0.06 DOM 1.49 (0.58–3.82) 0.407 DOM 1.40 (0.51–3.87) 0.516
    mir604 rs2368392 C/T 0.21/0.27 ADD 0.73 (0.43–1.24) 0.247 ADD 0.70 (0.40–1.23) 0.217
    mir608 rs4919510 C/G 0.25/0.21 ADD 1.61 (1.002.57) 0.048 ADD 1.64 (0.96–2.79) 0.071
    mir631 rs5745925 CT/— 0.10/0.09 DOM 0.77 (0.37–1.59) 0.481 DOM 0.65 (0.27–1.57) 0.335
Pri-miRNA
    let7f-2 rs17276588 G/A 0.04/0.03 DOM 0.33 (0.09–1.15) 0.081 DOM 0.41 (0.12–1.47) 0.172
    mir26a-1 rs7372209 C/T 0.37/0.28 DOM 1.51 (0.86–2.66) 0.154 DOM 1.33 (0.70–2.50) 0.384
    mir30a rs1358379 A/G 0.06/0.03 DOM 1.34 (0.59–3.07) 0.482 DOM 1.19 (0.45–3.17) 0.721
    mir30c-1 rs16827546 C/T 0.02/0.04 DOM 0.26 (0.03–2.11) 0.208 N/A N/A N/A
    mir100 rs1834306 C/T 0.47/0.46 REC 0.78 (0.38–1.59) 0.491 REC 0.81 (0.37–1.77) 0.597
    mir124-1 rs531564 C/G 0.16/0.12 DOM 1.57 (0.85–2.88) 0.150 DOM 1.42 (0.72–2.81) 0.307
    mir219-1 rs107822 G/A 0.20/0.26 DOM 0.75 (0.40–1.42) 0.380 ADD 0.70 (0.36–1.37) 0.296
rs213210 T/C 0.06/0.07 DOM 0.88 (0.34–2.28) 0.790 DOM 0.70 (0.24–2.03) 0.511
    mir373 rs12983273 C/T 0.15/0.14 DOM 1.75 (0.96–3.18) 0.066 DOM 2.04 (1.043.98) 0.038
rs10425222 C/A 0.08/0.05 DOM 2.04 (0.89–4.68) 0.09 DOM 1.94 (0.67–5.62) 0.220
a

Major/minor alleles.

b

Adjusted for age, sex, ethnicity, smoking status, stage, grade and treatments. P-value < 0.05 was in bold and used in the unfavorable genotype analysis.

c

Underlined P-values remained significant after false discovery rate adjustment at 0.05 level.