Table III.
Gene | SNP | Allelesa | Minor allelle frequency (recurrence/no recurrence) | Best-fitting genetic model (All histology types) |
Best-fitting genetic model (Clear cell carcinoma) |
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Model | HR (95% CI)b | P-valuec | Model | HR (95% CI)b | P-value | ||||
Biogenesis pathway | |||||||||
DROSHA | rs6877842 | G/C | 0.13/0.14 | DOM | 0.52 (0.23–1.18) | 0.118 | DOM | 0.36 (0.13–0.98) | 0.046 |
rs10719 | C/T | 0.21/0.26 | ADD | 0.61 (0.34–1.10) | 0.102 | ADD | 0.63 (0.33–1.20) | 0.161 | |
DGCR8 | rs417309 | G/A | 0.05/0.05 | DOM | 0.52 (0.17–1.65) | 0.269 | DOM | 0.79 (0.24–2.55) | 0.693 |
rs3757 | G/A | 0.17/0.24 | DOM | 0.61 (0.30–1.22) | 0.163 | DOM | 0.57 (0.25–1.30) | 0.182 | |
rs1640299 | G/T | 0.45//0.51 | DOM | 0.95 (0.49–1.86) | 0.889 | DOM | 0.86 (0.40–1.87) | 0.708 | |
XPO5 | rs11077 | A/C | 0.45/0.44 | DOM | 0.57 (0.29–1.13) | 0.109 | DOM | 0.36 (0.16–0.85) | 0.020 |
RAN | rs14035 | C/T | 0.28/0.29 | DOM | 0.55 (0.27–1.11) | 0.097 | DOM | 0.50 (0.23–1.09) | 0.080 |
DICER | rs3742330 | A/G | 0.04/0.06 | DOM | 0.75 (0.23–2.45) | 0.640 | DOM | 0.52 (0.13–2.04) | 0.348 |
rs13078 | T/A | 0.14/0.19 | DOM | 0.77 (0.39–1.55) | 0.468 | DOM | 0.61 (0.26–1.41) | 0.244 | |
TRBP | rs784567 | C/T | 0.47/0.40 | DOM | 0.79 (0.37–1.68) | 0.534 | REC | 1.31 (0.60–2.86) | 0.493 |
AGO1 | rs636832 | G/A | 0.10/0.15 | DOM | 0.82 (0.32–2.11) | 0.680 | DOM | 0.69 (0.24–1.99) | 0.497 |
rs595961 | A/G | 0.16/0.22 | REC | 3.52 (0.88–14.02) | 0.075 | REC | 3.65 (0.71–18.68) | 0.120 | |
AGO2 | rs4961280 | C/A | 0.20/0.20 | REC | 2.74 (0.30–24.66) | 0.369 | DOM | 0.62 (0.27–1.47) | 0.280 |
GEMIN4 | rs910924 | C/T | 0.26/0.23 | DOM | 1.53 (0.76–3.09) | 0.234 | DOM | 1.27 (0.54–3.02) | 0.585 |
rs2740348 | G/C | 0.16/0.15 | DOM | 0.88 (0.42–1.84) | 0.740 | DOM | 1.15 (0.50–2.64) | 0.744 | |
rs7813 | T/C | 0.41/0.36 | REC | 1.69 (0.67–4.28) | 0.268 | ADD | 1.38 (0.80–2.37) | 0.246 | |
rs910925 | G/C | 0.41/0.36 | REC | 1.69 (0.67–4.28) | 0.268 | ADD | 1.38 (0.80–2.37) | 0.246 | |
rs3744741 | C/T | 0.16/0.17 | DOM | 0.62 (0.30–1.27) | 0.190 | DOM | 0.67 (0.28–1.57) | 0.354 | |
rs1062923 | T/C | 0.16/0.15 | DOM | 1.09 (0.50–2.38) | 0.837 | DOM | 0.88 (0.33–2.35) | 0.801 | |
rs4968104 | T/A | 0.23/0.21 | DOM | 1.63 (0.85–3.12) | 0.144 | DOM | 1.30 (0.55–3.05) | 0.546 | |
GEMIN3 | rs197414 | C/A | 0.12/0.13 | DOM | 0.72 (0.30–1.71) | 0.46 | REC | 0.70 (0.28–1.74) | 0.44 |
rs197388 | T/A | 0.22/0.21 | DOM | 0.57 (0.28–1.15) | 0.12 | REC | 0.43 (0.19–0.98) | 0.05 | |
rs197412 | T/C | 0.42/0.44 | REC | 0.51 (0.21–1.24) | 0.137 | REC | 0.39 (0.14–1.08) | 0.069 | |
HIWI | rs1106042 | G/A | 0.05/0.07 | DOM | 0.52 (0.15–1.74) | 0.288 | DOM | 0.54 (0.16–1.84) | 0.325 |
Pre-miRNA | |||||||||
mir146a | rs2910164 | G/C | 0.23/0.27 | DOM | 0.47 (0.24–0.92) | 0.029 | DOM | 0.42 (0.19–0.90) | 0.026 |
mir196a-2 | rs11614913 | C/T | 0.34/0.38 | DOM | 0.37 (0.19–0.73) | 0.004 | DOM | 0.29 (0.14–0.64) | 0.002 |
mir423 | rs6505162 | C/A | 0.43/0.48 | REC | 0.39 (0.17–0.89) | 0.026 | REC | 0.46 (0.19–1.13) | 0.091 |
mir492 | rs2289030 | C/G | 0.06/0.08 | DOM | 0.79 (0.25–2.48) | 0.692 | DOM | 0.58 (0.13–2.62) | 0.476 |
mir604 | rs2368392 | C/T | 0.22/0.28 | REC | 0.27 (0.04–1.99) | 0.197 | REC | 0.28 (0.04–2.16) | 0.223 |
mir608 | rs4919510 | C/G | 0.29/0.22 | ADD | 1.88 (1.12–3.16) | 0.017 | ADD | 2.21 (1.24–3.92) | 0.007 |
mir631 | rs5745925 | CT/— | 0.11/0.08 | DOM | 3.93 (1.69–9.17) | 0.002 | DOM | 4.62 (1.72–12.40) | 0.002 |
Pri-miRNA | |||||||||
let7f-2 | rs17276588 | G/A | 0.05/0.03 | DOM | 1.05 (0.32–3.43) | 0.929 | DOM | 1.43 (0.41–4.98) | 0.573 |
mir26a-1 | rs7372209 | C/T | 0.26/0.29 | DOM | 0.84 (0.43–1.65) | 0.622 | ADD | 0.67 (0.33–1.37) | 0.274 |
mir30a | rs1358379 | A/G | 0.06/0.03 | DOM | 1.36 (0.44–4.18) | 0.595 | DOM | 1.41 (0.36–5.56) | 0.620 |
mir30c-1 | rs16827546 | C/T | 0.00/0.04 | N/A | N/A | N/A | N/A | N/A | N/A |
mir100 | rs1834306 | C/T | 0.40/0.49 | REC | 0.51 (0.21–1.24) | 0.139 | REC | 0.53 (0.20–1.42) | 0.206 |
mir124-1 | rs531564 | C/G | 0.13/0.11 | DOM | 1.83 (0.83–4.07) | 0.136 | DOM | 1.95 (0.83–4.59) | 0.127 |
mir219-1 | rs107822 | G/A | 0.27/0.27 | DOM | 1.85 (0.89–3.83) | 0.097 | DOM | 2.18 (0.94–5.09) | 0.071 |
rs213210 | T/C | 0.08/0.07 | DOM | 1.47 (0.60–3.59) | 0.401 | DOM | 1.47 (0.56–3.85) | 0.433 | |
mir373 | rs12983273 | C/T | 0.14/0.14 | DOM | 1.68 (0.80–3.53) | 0.174 | DOM | 1.23 (0.52–2.87) | 0.640 |
rs10425222 | C/A | 0.06/0.05 | DOM | 1.84 (0.64–5.27) | 0.258 | DOM | 2.39 (0.69–8.26) | 0.168 |
Major/minor alleles.
Adjusted for age, sex, ethnicity, smoking status, stage, grade and treatments. P-value < 0.05 was in bold and used in the unfavorable genotype analysis.
Underlined P-values remained significant after false discovery rate adjustment at 0.05 level.