Table 2.
Validation results for LacI using RegulonDB 6.7
| Locus ID | Name | CR Tag | Sequences | USP | Matches in RegulonDB | Autoreg |
|---|---|---|---|---|---|---|
| b1658 | purR | IKSTTSHRFV | 168 | 60 | Y | + |
| b2837 | galR | IKSVASRPKA | 140 | 45 | Y | + |
| b3753 | rbsR | MKSTSSHRFV | 116 | 41 | Y | + |
| b4241 | treR | IKGKSSRSGV | 97 | 15 | Y | + |
| b0345 | lacI | LYSYQSRSHV | 37 | 14 | Y | + |
| b2714 | ascG | MLSKASRGYV | 62 | 11 | Y | + |
| b3934 | cytR | MKSTASRDKV | 85 | 12 | N | + |
| b1320 | ycjW | IYSKSSRTNI | 61 | 20 | − | + |
The matches in RegulonDB are coded as follows: Y means a match to any site, N means no matches and – means no RegulonDB site. The autoreg column is a + if there is a match to the super-promoter and - if there is no match.