Table 3.
Validation results for TetR using RegulonDB 6.7
| Locus ID | Name | CR Tag | Sequences | USP | Matches in RegulonDB | Autoreg |
|---|---|---|---|---|---|---|
| b3963 | fabR | RAPTSYR | 193 | 81 | Y | − |
| b1649 | nemR | SPKGSYH | 141 | 49 | Y | + |
| b0313 | betI | ASTGISH | 98 | 41 | Y | + |
| b3264 | envR | NTRGAYW | 104 | 27 | Y | + |
| b1013 | rutR | ESKTNLY | 95 | 18 | N | + |
| b3641 | slmA | ASEAAYR | 282 | 148 | − | + |
| b0846 | ybjK | RPLGSTY | 118 | 45 | − | + |
| b4251 | yjgJ | ANPPSYA | 87 | 19 | − | + |
| b0796 | ybiH | RNIATTY | 105 | 17 | − | + |
| b1111 | ycfQ | AKAPTYA | 97 | 17 | − | + |
The matches in RegulonDB are coded as follows: Y means a match to any site, N means no matches and – means no RegulonDB site. The autoreg column is a + if there is a match to the super-promoter and - if there is no match.