Table 2. Benchmark Results for Tree-Of-Life Dataset.

Program	Sequences	Alignment Length	Elapsed Time
			64	128
MPIprotdist	191	8089	109394	62606
MPIprotpars	191	8089	209762	123284

Program is the parallel version PHLIP program. Sequences refers to the number of sequences present in the alignment. Alignment Length refers to the length of the underlying multiple sequence alignment being analyzed. Elapsed Time is the elapsed time in seconds for the parallel code to run on the Altix system for the number of cores shown.