Table 1. STACK clustering and clonelinking information.
Tissue |
Input sequences |
Singletons |
Multi-sequence clusters |
Linked sequences |
Average length of linked sequences (bases) |
Adipose | 2376 | 1693 | 181 | 0 | |
Brain | 229 005 | 46 336 | 225 88 | 11 018 | 1128.8 |
Cochlea | 8494 | 3543 | 1220 | 265 | 746.8 |
Connective | 47 081 | 14 433 | 5197 | 1626 | 973.2 |
Digestive | 142 659 | 20 430 | 10 643 | 1971 | 1444.7 |
Disease | 327 613 | 53 074 | 14 423 | 2582 | 948.6 |
Eye | 28 554 | 14 308 | 3486 | 4207 | 789.5 |
Genomic | 166 358 | 42 795 | 16 918 | 1740 | 749 |
Gland | 172 314 | 34 629 | 16 972 | 4734 | 1245.2 |
Heart | 73 941 | 21 902 | 8795 | 3728 | 922 |
Hemato-lymph | 307 285 | 60 009 | 24 947 | 11674 | 928.3 |
Lung | 96 917 | 22 218 | 12 669 | 4213 | 978.9 |
Muscle | 30 512 | 5454 | 2338 | 1165 | 881.1 |
Olfactory | 2600 | 1478 | 248 | 458 | 664 |
Other | 26 175 | 9637 | 4356 | 3762 | 1016.6 |
Reproductive | 293 311 | 50 199 | 28 218 | 10 353 | 1342.6 |
Whole-body indexa | 937 782 | 159 743 | 66 081 | 7099 | 1948.3 |
aThe whole-body index represent the processing of dbEST (GenBank110) and whereas the STACK tissue-level data represents processing of dbEST (GenBank115).