Table 1. iProClass database search options with examples.
Identifier |
Example |
Demo/example linka |
A. Report retrieval with unique identifiers | ∼/RPTdemo.html | |
Protein entry ID (PIR or SWISS-PROT ID) | A31997 | ∼/RPTPex.html |
Superfamily ID | SF000130 | ∼/RPTFex.html |
B. Protein list retrieval with text search | ∼/LSTPdemo.html | |
Enzyme classification (EC number) | 2.7.1.25 | ∼/LSTPex1.html |
Protein title and species | ‘bifunctional’ and ‘Escherichia coli’ | ∼/LSTPex2.html |
C. Family list retrieval with text search | ∼/LSTFdemo.html | |
Superfamily name | zinc finger | ∼/LSTFex1.html |
Keyword or Pfam ID | ‘GMP biosynthesis’ or ‘PF00478’ | ∼/LSTFex2.html |
D. List retrieval with sequence search | ∼/BLASTdemo.html | |
Sequence identifier (PIR or SWISS-PROT ID) | >F71428 | ∼/BLASTex.html |
Query sequence (FASTA format) | MDQTVSENLIQVK … | ∼/BLASTex.html |
aiProClass search home: http://pir.georgetown.edu/iproclass.