Table 2.
Multiple Sequence Methods.
| Feature: | Text Interface Program: | JAVA/Windows GUI Menu Item: | Class Library and Function Name: |
|---|---|---|---|
| Dynalign [23,41,46] | dynalign | Dynalign RNA | Dynalign_object::Dynalign |
| OligoWalk [31-33] | OligoWalk | OligoWalk | Oligowalk_object::Oligowalk |
| OligoScreen [55] | oligoscreen | OligoScreen | Oligowalk_object::OligoScreen |
| Bimolecular structure prediction with intramolecular pairs [33] | bifold | Fold RNA Bimolecular |
HybridRNA::FoldBimolecular |
| PARTS [24,48] | PARTS | - | - |
| Bimolecular partition function (no intramolecular pairs) [31] | bipartition | Partition Function RNA Bimolecular |
HybridRNA::PartitionFunctionBimolecular |
| Bimolecular structure prediction without intramolecular pairs | DuplexFold | - | HybridRNA::FoldDuplex |