Table 1. Description of HyPaLib items.
Kind |
Description |
Featurea |
Remark |
ID | Identifier | mu | Unique name of a hybrid pattern |
DT | Date | mu | List of creation/modification dates in format DD/MM/YYYY |
DE | Description | m | Informal description or comment |
KW | Keyword | List of keywords useful for database search | |
HP | Hybrid Pattern | u | Formal definition in the syntax of HyPaL |
NO | EMBL-Number | Release of EMBL according to which hybrid pattern was verified | |
AL | Alignment | Aligned sequences and properties describing their origins | |
CS | Consensus Sequence | u | Consensus sequence of aligned sequences (‘-’ is used to align the consensus sequence with the consensus structure) |
ST | Consensus Structure | u | Valid secondary structure in Vienna format (bracket-dot notation) |
PM | Parameters | Special parameters | |
RE | References | List of references |
am means a mandatory item and u means a unique item.