Table 1. Relation between the minimum number of captured SNPs (k), the number of tagSNPs found in Hsa6p with a given k (#tagSNPs), the coverage of Hsa6p (proportion of markers captured by each set of tagSNPs, Cov), the maximum TD test statistics observed considering a given k (maxTTDT) and the corresponding Monte Carlo P-values, regarding CEU fathers.
| k | #tagSNPs | Cov | maxTTDT | P-value |
|---|---|---|---|---|
| 1 | 9781 | 0.75a | 14.22 | 0.085 |
| 2 | 5146 | 0.61 | 14.22 | 0.041 |
| 5 | 2461 | 0.47 | 14.22 | 0.022 |
| 10 | 1091 | 0.31 | 12.25 | 0.046 |
| 20 | 326 | 0.16 | 12.25 | 0.014 |
| 30 | 133 | 0.09 | 9.94 | 0.088 |
a
25% of the SNPs have MAF<0.15.