Table 2. Age estimates for B4a1a1 haplogroup, Polynesian motif, and Malagasy motif using the rho (ρ) statistic dating method.
Coding region nt 577–16 023 | Synonymous mutations | Control region nt 16 024–576 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Haplogroup | n | ρ | σ | TMRCA years | 95% CI | Mutation rate | ρ | σ | TMRCA years | 95% CI | Mutation rate | ρ | σ | TMRCA years | 95% CI | Mutation rate |
B4a1a1 | 23 | 1.57 | 0.26 | 8.100 | 5400–10 800 | (1) | 0.70 | 0.17 | 4.700 | 2500–7000 | (2) | 1.57 | 0.26 | 14.200 | 9600–18 800 | (4) |
0.83 | 0.19 | 6.500 | 3600–9500 | (3) | — | — | — | — | — | |||||||
Polynesian motif | 18 | 1.61 | 0.30 | 8.300 | 5200–11 400 | (1) | 0.78 | 0.21 | 5.300 | 2500–8100 | (2) | 0.89 | 0.22 | 8.000 | 4200–12 000 | (4) |
0.94 | 0.23 | 7.400 | 3900–11 000 | (3) | — | — | — | — | — | |||||||
Malagasy motif | 3 | 0 | — | — | — | — | 0 | — | — | — | — | 0.66 | 0.47 | 6.000 | 0–14 300 | (4) |
Note. Sequences used for molecular dating of the Malagasy motif and the Polynesian motif are given in Figure 1. The sequences used for molecular dating of the B4a1a1 haplogroup included, in addition to the 15 complete mtDNA sequences harboring the Polynesian motif and the three sequences harboring the Malagasy motif reported in Figure 1, five complete mtDNA sequences reported by Pierson et al.5 (DQ372873, DQ372874, DQ372875, and DQ372877) and Ingman and Gyllensten44 (AY289076). Mutation rate references: (1) One substitution per 5139 years;49 (2) One synonymous transition per 6764 years;40 (3) One synonymous mutation (transition or transversion) per 7884 years;48 (4) One mutation per 9058 years.48 Age estimates of the Malagasy motif calculated by using other control region mutation rates are provided in Supplementary Table S2.