Skip to main content
. 2010 Apr 7;18(7):838–843. doi: 10.1038/ejhg.2010.27

Table 4. Summary of allelic association.

SNPa Studiesb Allele 1 Allele 2 Freq Allele 1 Freq SE Allele 1 Min Freq Max Freq Weightc Z scored P-value
(a) Three replication studies combined
rs3743481 1,4 T C 0.408 0.024 0.395 0.453 2376 0.75 0.4534
rs9652490 1,3,4 G A 0.242 0.014 0.231 0.263 3305 3.39 0.0007
rs3144 1,4 C T 0.312 0.030 0.255 0.328 2374 2.25 0.0242
rs8028808 1,4 A G 0.168 0.012 0.144 0.174 2382 3.18 0.0015
                     
(b) All four studies combined
rs3743481 1,4 T C 0.408 0.024 0.395 0.453 2376 0.75 0.4534
rs9652490 1,2,3,4 G A 0.310 0.034 0.231 0.329 19854 6.74 1.55E-11
rs3144 1,4 C T 0.312 0.030 0.255 0.328 2374 2.25 0.02421
rs8028808 1,4 A G 0.168 0.012 0.144 0.174 2382 3.18 0.00148

Only rs9652490 was genotyped in all studies. For each of the remaining SNPs, studies that had the genotype are indicated:

a

In this study.

b

Stefansson et al.14

c

Tan et al.16

d

Vilariño-Güell et al.15 When alleles were called differently, alleles from this study were used. Weight represents the total number of subjects genotyped. The direction of the Z score represents allelic association with allele 1.