Table 3.
Images (provided by multiple users) | |
---|---|
Step 1 | Obtaining reference images from a web data base |
Step 2 | Obtaining images of unknown specimens |
Digitization (performed by a single user) | |
Step 3 | Digitizing the images of reference (reference coordinates) |
Step 4 | Digitizing the images of the unknown specimens (unknown coordinates) |
Classification | |
Procrustes | |
Step 5 | Pairwise Procrustes distances between each unknown and each reference image |
Mahalanobis | |
Step 6* | Computing shape variables on the combined sets of coordinates obtained from step 3 and one unknown specimen obtained from step 4 |
Step 7 | Computing a discriminant model using the reference shape variables, exclusively (a partition of data from step 6) |
Step 8 | Entering to the discriminant model the shape variables of the unknown specimen (a partition of data from step 6) |
Go to Step 6 for the next unknown specimen. |
General steps implemented in the CLIC package, relevant to the geometric approach: digitization (Steps 3 and 4, module COO of the CLIC package), the Procrustes classification (Step 5, module MOG of CLIC) and the discriminant analysis (Steps 6 and 7, module MOG) to identify organisms using mean reference pictures (Step 1) and own pictures (Step 2). The step 2 refers to the field and/or laboratory activities of the biologist: for entomologists, it generally requires the traditional tasks of collecting, dissecting and mounting insects. (*) To reduce multidimensionality, the number of shape variables (Step 6) can be reduced by selecting a set of few first relative warps (RW, i.e. principal components of partial warps). The MOG module automatically selects a number of RW lower than the smallest sample group.