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. 2010 Nov 6;48(4):179–192. doi: 10.1007/s10858-010-9454-4

Table 1.

13C enrichment levels at various carbon positions within ribonucleotides harvested from DL323 E. coli grown on 13C-1,3-glycerol with and without 13C-formate as carbon sources

Carbon position labeled 13C-Carbon source: 1,3-Glycerol only 13C-Carbon source: 1,3-Glycerol and Formate
Purinea
 Ade C2 0.88 ± 0.04 0.82 ± 0.13
 C8 0.92 ± 0.07 0.81 ± 0.13b
Pyrimidinea
 C5 0.88 ± 0.04 0.92 ± 0.03
 C6 <0.05 0.22 ± 0.02
Ribose
 C1′a 0.58 ± 0.08 0.47 ± 0.11
 C2′b 0.50 ± 0.04 0.57 ± 0.09
 C3′b 0.93 ± 0.01 0.77 ± 0.07
 C4′b <0.02 <0.02
 C5′c 0.94 ± 0.03 0.85 ± 0.06

aThe percentage label is calculated as an average of three methods: (i) the ratio of the sum of the intensities of satellite peaks to the sum of the intensities of the satellite and center peaks using the 2-bond 15N HSQC without 13C decoupling during acquisition (Dayie and Thakur 2010); (ii) the ratio of the sum of the intensities of satellite peaks to the sum of the intensities of the satellite and center peaks using the 1D 1H experiment without 13C decoupling during acquisition and (iii) using the fractional enrichment (Frac_Ei) method of Lundström et al. (2007) as described in the text. We find that direct 1D and 2D methods (i and ii) give consistently slightly higher values than the fractional enrichment method (iii)

bThe percentage label (Plabel) is calculated as in (a) but this time with only method (iii)

cThe percentage label (Plabel) is calculated as in (a) but this time with only methods (ii) and (iii)