Table 2. Genes differentially expressed between F9 Wt and F9 RARγ−/− cells after RA treatment for 24 h, identified using U74AV2 microarrays.
Only those genes with at least a 2.0-fold change in F9 Wt cells relative to F9 RARγ−/− cells with p values ≤0.05 are shown. Fold change=F9 Wt/F9 RARγ−/−.
| Affymetrix ID | Fold Changeab | Gene Symbol | Gene Ttile |
|---|---|---|---|
| 99936_at | 25.08 | Tie1 | tyrosine kinase receptor 1 |
| 160943_at | 15.3 | Stag3 | stromal antigen 3 |
| 97426_at | 13.86 | Emp1 | epithelial membrane protein 1 |
| 93503_at | 4.634 | Sfrp2 | secreted frizzled-related sequence protein 2 |
| 101027_s_at | 4.142 | Pttg1 | pituitary tumor-transforming 1 |
| 103506_f_at | 3.773 | Dsc2 | Desmocollin 2 |
| 104146_at | 3.567 | Rasip1 | Ras interacting protein 1 |
| 97379_at | 3.534 | Fbp2 | fructose bisphosphatase 2 |
| 99669_at | 3.532 | Lgals1 | Lectin, galactose binding, soluble 1 |
| 161482_f_at | 3.427 | Prph1 | Peripherin 1 |
| 104580_at | 3.385 | Plcd | phospholipase C, delta |
| 100610_at | 2.998 | Capns1 | calpain, small subunit 1 |
| 95426_at | 2.946 | Echs1 | enoyl Coenzyme A hydratase, short chain, 1, mitochondrial |
| 101358_at | 2.885 | Plcb3 | phospholipase C, beta 3 |
| 104746_at | 2.821 | Fkbp7 | FK506 binding protein 7 |
| 160978_at | 2.808 | D630035O19Rik | RIKEN cDNA D630035O19 gene |
| 96865_at | 2.677 | Marcks | myristoylated alanine rich protein kinase C substrate |
| 98435_at | 2.631 | Adss | adenylosuccinate synthetase, muscle |
| 100828_at | 2.325 | --- | |
| 160388_at | 2.305 | Sc4mol | sterol-C4-methyl oxidase-like |
| 160215_at | 2.299 | Aes | amino-terminal enhancer of split |
| 104232_at | 2.289 | Gjb3 | gap junction membrane channel protein beta 3 |
| 96016_at | 2.27 | 2700094K13Rik | RIKEN cDNA 2700094K13 gene |
| 102993_at | 2.265 | Ggta1 | glycoprotein galactosyltransferase alpha 1, 3 |
| 98535_at | 2.247 | Comt | catechol-O-methyltransferase |
| 92586_at | 2.242 | Glud | Glutamate dehydrogenase |
| 99184_at | 2.232 | Csad | cysteine sulfinic acid decarboxylase |
| 101107_at | 2.222 | Calu | Calumenin |
| 102926_at | 2.193 | Gfra3 | Glial cell line derived neurotrophic factor family receptor alpha 3 |
| 93750_at | 2.16 | Gsn | Gelsolin |
| 104673_at | 2.137 | Epha4 | Eph receptor A4 |
| 103085_at | 2.133 | Hebp1 | Heme binding protein 1 |
| 92607_at | 2.103 | Peg1 | Mus musculus Peg1/MEST protein |
| 93522_at | 2.094 | Rad9 | RAD9 homolog (S. pombe) |
| 95733_at | 2.048 | Slc29a1 | solute carrier family 29 (nucleoside transporters), member 1 |
| 97717_at | 2.041 | Tcf15 | transcription factor 15 |
| 92796_at | 2.04 | Akp2 | alkaline phosphatase 2, liver |
| 96038_at | 2.038 | Rnase4 | ribonuclease, RNase A family 4 |
| 93373_at | 2.023 | Naglu | alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) |
| 103056_at | 0.496 | 6230425C22Rik | RIKEN cDNA 6230425C22 gene |
| 103423_at | 0.495 | Cyb561 | cytochrome b-561 |
| 93038_f_at | 0.486 | Anxa1 | annexin A1 |
| 95756_at | 0.486 | Ftsj3 | FtsJ homolog 3 (E. coli) |
| 100600_at | 0.467 | Cd24a | CD24a antigen |
| 92306_at | 0.465 | Ott | Ovary testis transcribed |
| 101030_at | 0.426 | Rhob | ras homolog gene family, member B |
| 102841_at | 0.414 | Similar to ribosomal protein L40 (LOC216818), mRNA | |
| 96151_at | 0.407 | Mocos | molybdenum cofactor sulfurase |
| 160236_at | 0.383 | 9630044O09Rik | RIKEN cDNA 9630044O09 gene |
| 95954_at | 0.379 | D7Ertd143e | DNA segment, Chr 7, ERATO Doi 143, expressed |
| 93864_s_at | 0.36 | Enah | enabled homolog (Drosophila) |
| 95883_at | 0.349 | Phf17 | PHD finger protein 17 |
| 104486_at | 0.349 | A2m | alpha-2-macroglobulin |
| 102344_s_at | 0.345 | Tcea3 | transcription elongation factor A (SII), 3 |
| 93680_at | 0.343 | Stk10 | serine/threonine kinase 10 |
| 102418_at | 0.339 | Tex19 | testis expressed gene 19 |
| 96704_at | 0.339 | Sfn | Stratifin |
| 99577_at | 0.33 | Kitl | kit ligand |
| 104063_at | 0.327 | Srcasm | Src activating and signaling molecule |
| 95670_at | 0.308 | Stmn2 | stathmin-like 2 |
| 99034_at | 0.266 | Irx3 | Iroquois related homeobox 3 (Drosophila) |
| 104338_r_at | 0.25 | 1200008D14Rik | RIKEN cDNA 1200008D14 gene |
| 93028_at | 0.246 | H19 | H19 fetal liver mRNA |
| 101883_at | 0.212 | Xlr3b | XLR related protein, Mouse A12 mRNA |
| 93294_at | 0.211 | Ctgf | connective tissue growth factor |
| 103317_at | 0.189 | Coch5B2 | Coagulation factor C homolog (Limus polyphemus) cds=(68,1726) |
| 100967_at | 0.189 | Slc27a2 | solute carrier family 27 (fatty acid transporter), member 2 |
| 104126_at | 0.188 | Cstf2t | cleavage stimulation factor, 3′ pre-RNA subunit 2, tau |
| 161081_at | 0.158 | Cpeb2 | cytoplasmic polyadenylation element binding protein 2 |
| 104286_at | 0.106 | Slc38a4 | solute carrier family 38, member 4 |
| 93013_at | 0.0853 | Idb2 | inhibitor of DNA binding 2 |
| 95706_at | 0.0819 | Lgals3 | lectin, galactose binding, soluble 3 |
a
Average from two experiments.
b
Some genes have multiple distinct probes on the GeneChip® resulting in different fold-changes from different probes.