Table 4, B.

Top 50 genes with at least 2-fold lower expression in RA-treated Wt F9 cells relative to RA-treated RARγ−/− cells at 24 h. Fold change=F9 Wt/F9 RARγ−/−.

Affymetrix ID	Fold Changeab	Gene Symbol	Gene Title
1419227_at	0.195	Cct6b	Chaperonin subunit 6b (zeta)
1424531_a_at	0.191	Tcea3	Transcription elongation factor A (SII), 3
1449005_at	0.188	Itgav	Integrin alpha V
1436657_at	0.187		LOC380738 (LOC380738), mRNA
1455015_at	0.187	4933431N12Rik	RIKEN cDNA 4933431N12 gene
1452384_at	0.187	Enpp3	ectonucleotide pyrophosphatase/phosphodiesterase 3
1455881_at	0.186	2610524G09Rik	RIKEN cDNA 2610524G09 gene
1416626_at	0.185	Pla2g1b	Phospholipase A2, group IB, pancreas
1441971_at	0.184		Transcribed sequences
1436677_at	0.184	1810032O08Rik	sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-beta-galactosyl-1,3)-N-acetyl galactosaminde alpha-2,6-sialyltransferase) B
1416953_at	0.183	Ctgf	Connective tissue growth factor
1426808_at	0.181	Lgals3	Lectin, galactose binding, soluble 3
1450989_at	0.18	Tdgf1	teratocarcinoma-derived growth factor
1428942_at	0.178	Mt2	metallothionein 2
1434719_at	0.175	A2m	Alpha-2-macroglobulin
1434094_at	0.162	6330530A05Rik	RIKEN cDNA 6330530A05 gene
1423281_at	0.161	Stmn2	stathmin-like 2
1453219_a_at	0.149	L1td1	LINE-1 type transposase domain containing 1
1425035_s_at	0.144	Dnmt3l	DNA (cytosine-5-)-methyltransferase 3-like
1431633_x_at	0.142	4930526L06Rik	Adult male testis cDNA, RIKEN full-length enriched library, clone:4930526L06 product:unknown EST, full insert sequence
1423280_at	0.137	Stmn2	stathmin-like 2
1439207_at	0.135		Similar to paraneoplastic antigen like 5; paraneoplastic antigen family 5 (LOC386569), mRNA
1433789_at	0.13	Rnu17d	18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830421G02 product:unknown EST, full insert sequence
1450943_at	0.128	Ndufa11	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
1439746_at	0.126	C130085G02Rik	RIKEN cDNA C130085G02 gene
1423327_at	0.122	D730048I06Rik	RIKEN cDNA D730048I06 gene
1423378_at	0.115	Adam23	a disintegrin and metalloprotease domain 23
1436388_a_at	0.114	3830406C13Rik	RIKEN cDNA 3830406C13 gene
1417156_at	0.104	Krt19	Keratin 19
1437786_at	0.095	C80008	Transcribed sequences
1453874_at	0.0878	4933401B06Rik	RIKEN cDNA 4933401B06 gene
1456035_at	0.0827		Transcribed sequences
1425926_a_at	0.0799	Otx2	Orthodenticle homolog 2 (Drosophila)
1450177_at	0.0773	Ngfr	Nerve growth factor receptor (TNFR superfamily, member 16)
1417122_at	0.0767	Vav3	Vav 3 oncogene; synonyms: AA986410, MGC27838, A530094I06Rik; isoform 2 is encoded by transcript variant 2; Mus musculus vav 3 oncogene (Vav3), transcript variant 2, mRNA.
1454254_s_at	0.072	Itgb1	Integrin beta 1 (fibronectin receptor beta)
1431711_a_at	0.07	Apbb2	Amyloid beta (A4) precursor protein-binding, family B, member 2
1429701_at	0.0689	2410003J06Rik	RIKEN cDNA 2410003J06 gene
1434739_at	0.0629	3830422N12Rik	RIKEN cDNA 3830422N12 gene
1429203_at	0.06	2410076I21Rik	RIKEN cDNA 2410076I21 gene
1423523_at	0.0587	Aass	aminoadipate-semialdehyde synthase
1436799_at	0.0559	D230005D02Rik	RIKEN cDNA D230005D02 gene
1447021_at	0.0509		CDNA clone MGC:61032 IMAGE:30024827, complete cds
1419540_at	0.0496	Clec5a	C-type lectin domain family 5, member a
1420357_s_at	0.0474	Fndc6	Fibronectin type III domain containing 6
1448889_at	0.0334	Slc38a4	Solute carrier family 38, member 4
1419241_a_at	0.0192	Aire	Autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)
1453544_at	0.0184	4933424F23Rik	RIKEN cDNA 4933424F23 gene
1428111_at	0.0165	Slc38a4	Solute carrier family 38, member 4

^aAverage from three experiments.

^bSome genes have multiple distinct probes on the GeneChip® resulting in different fold-changes from different probes.