Appendix 1. RA responsive genes in the F9 Wt cells identified using MG-430.2.

F9 Wt cells were treated for 24 h with 1 μM RA or vehicle control. Only those genes with at least a 2.0-fold change in RA treated F9 Wt cells relative to control treated cells with p values ≤0.05 are shown. Fold change=F9 Wt+RA/F9 Wt control.

Affymetrix ID	Fold Changeab	Gene Symbol	Gene Title
1449582_at	43.69	Cdx1	Caudal type homeo box 1
1427354_at	40.16	Hoxa4	homeo box A4
1449397_at	35.68	Hoxb2	Homeo box B2
1418415_at	26.59	Il12b	Interleukin 12b
1455498_at	23.18		Transcribed sequence with weak similarity to protein pir:A43932 (H. sapiens) A43932 mucin 2 precursor, intestinal-human
1423836_at	21.98	Zfp503	zinc finger protein 503
1422723_at	16.94	Stra6	Stimulated by retinoic acid gene 6
1422674_s_at	15.55	Crygb	Crystallin, gamma B
1453501_at	13.08	Il12b	Interleukin 12b
1422617_at	11.5	Top1	Topoisomerase (DNA) I
1435693_at	10.2	BC012256	cDNA sequence BC012256
1451191_at	9.91	Crabp1	Cellular retinoic acid binding protein I
1454906_at	8.227	Rarb	retinoic acid receptor, beta
1419430_at	7.714	Cyp26a1	Cytochrome P450, family 26, subfamily a, polypeptide 1
1456229_at	7.222		H3122A02-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3122A02 3′, mRNA sequence.
1416855_at	7.03	Gas1	BB550400 RIKEN full-length enriched, 2 days pregnant adult female oviduct Mus musculus cDNA clone E230022A16 3′ similar to X65128 M. musculus gas1 mRNA, mRNA sequence.
1420603_s_at	6.49	Sgk3	Serum/glucocorticoid regulated kinase 3
1418880_at	6.354	Gfra3	Glial cell line derived neurotrophic factor family receptor alpha 3
1448926_at	6.102	Hoxa5	Homeo box A5
1460379_at	6.055	Hoxb4	homeo box B4
1420568_at	5.652	Msc	Musculin
1455037_at	5.247	Plxna2	plexin A2
1422007_at	5.069	Krt8	Keratin 8
1420565_at	5.057	Hoxa1	Homeo box A1
1451481_s_at	5.049	Cul7	Cullin 7
1433428_x_at	4.912	Tgm2	transglutaminase 2, C polypeptide
1436075_at	4.842	Sfrp5	secreted frizzled-related sequence protein 5
1416149_at	4.695	Akt2	Thymoma viral proto-oncogene 2
1427233_at	4.662	Sdccag33	serologically defined colon cancer antigen 33
1446358_at	4.603		0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230033K16 product:unknown EST, full insert sequence
1418084_at	4.478	Nrp1	Neuropilin 1
1438512_at	4.414	LOC210321	epididymal protein Av381126
1418445_at	4.405	Slc16a2	solute carrier family 16 (monocarboxylic acid transporters), member 2
1423023_at	4.404	Sfrp5	Secreted frizzled-related sequence protein 5
1421474_a_at	4.372	Capzb	Capping protein (actin filament) muscle Z-line, beta
1448494_at	4.321	Gas1	BB550400 RIKEN full-length enriched, 2 days pregnant adult female oviduct Mus musculus cDNA clone E230022A16 3′ similar to X65128 M. musculus gas1 mRNA, mRNA sequence.
1449089_at	4.31	Nrip1	synonyms: RIP140, 9630050P12, 6030458L20Rik; go_component: nucleus [goid 0005634] [evidence IDA] [pmid 9774688]; go_function: transcription co-repressor activity [goid 0003714] [evidence IDA] [pmid 9774688]; go_function: protein binding [goid 0005515] [evidence IPI] [pmid 9774688]; go_process: negative regulation of transcription from Pol II promoter [goid 0000122] [evidence IDA] [pmid 9774688]; Mus musculus nuclear receptor interacting protein 1 (Nrip1), mRNA.
1437277_x_at	4.262	Tgm2	transglutaminase 2, C polypeptide
1434384_at	4.237	8430438I05Rik	nuclear receptor interacting protein 1
1423835_at	4.207	Zfp503	zinc finger protein 503
1418379_s_at	4.133	1700034M03Rik	RIKEN cDNA 1700034M03 gene
1418496_at	4.116	Foxa2	Forkhead box A2
1435261_at	4.087	4732416N19Rik	Adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230114I18 product:unknown EST, full insert sequence
1427433_s_at	4.024	5730446D14Rik	RIKEN cDNA 5730446D14 gene
1460605_at	4.02	AA606869	Similar to Homeobox protein goosecoid-like (GSC-2) (LOC381848), mRNA
1435184_at	4.013	B430320C24Rik	0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030020K21 product:weakly similar to HYPOTHETICAL 13.8 KDA PROTEIN [Homo sapiens], full insert sequence
1422099_a_at	3.99	Oprl1	Opioid receptor-like 1
1448327_at	3.961	AI747699	Expressed sequence AI747699
1417937_at	3.932	Ctsb	Cathepsin B
1439341_at	3.903		Transcribed sequences
1422008_a_at	3.886	Krt8	Keratin 8
1417133_at	3.777	Pmp22	Peripheral myelin protein
1439561_at	3.759	2010012O05Rik	BB322051 RIKEN full-length enriched, adult male adrenal gland Mus musculus cDNA clone B330007D01 3′, mRNA sequence.
1420753_at	3.719	Kitl	Kit ligand
1419735_at	3.71	C3	Complement component 3
1449370_at	3.619	Sox4	SRY-box containing gene 4
1447211_at	3.611	Nrip1	nuclear receptor interacting protein 1
1449071_at	3.572	Myl7	Myosin, light polypeptide 7, regulatory
1422597_at	3.572	Mmp15	Matrix metallopeptidase 15
1452303_at	3.485	Arhgef10	ceroid-lipofuscinosis, neuronal 8
1426927_at	3.473	Ap3b2	adaptor-related protein complex 3, beta 2 subunit
1418446_at	3.453	Slc16a2	solute carrier family 16 (monocarboxylic acid transporters), member 2
1453286_at	3.445	Plxna2	BB085537 RIKEN full-length enriched, adult male diencephalon Mus musculus cDNA clone 9330200E06 3′, mRNA sequence.
1440143_at	3.434	F630022B06Rik	RIKEN cDNA F630022B06 gene
1447845_s_at	3.404	Vnn1	vanin 1
1454677_at	3.373	Timp2	tissue inhibitor of metalloproteinase 2
1417500_a_at	3.367	Tgm2	Transglutaminase 2, C polypeptide
1418469_at	3.359	Nrip1	synonyms: RIP140, 9630050P12, 6030458L20Rik; go_component: nucleus [goid 0005634] [evidence IDA] [pmid 9774688]; go_function: transcription co-repressor activity [goid 0003714] [evidence IDA] [pmid 9774688]; go_function: protein binding [goid 0005515] [evidence IPI] [pmid 9774688]; go_process: negative regulation of transcription from Pol II promoter [goid 0000122] [evidence IDA] [pmid 9774688]; Mus musculus nuclear receptor interacting protein 1 (Nrip1), mRNA.
1433662_s_at	3.353	Timp2	tissue inhibitor of metalloproteinase 2
1429134_at	3.347	2900056N03Rik	RIKEN cDNA 2900056N03 gene
1430425_at	3.328	5330435L01Rik	RIKEN cDNA 5330435L01 gene
1417956_at	3.325	Cidea	Cell death-inducing DNA fragmentation factor, alpha subunit-like effector A
1420150_at	3.316	4930422J18Rik	RIKEN cDNA 4930422J18 gene
1450460_at	3.233	Krt8	Keratin 8
1437347_at	3.217	Ednrb	endothelin receptor type B
1448754_at	3.201	Rbp1	Retinol binding protein 1, cellular
1420831_at	3.19	Klhl22	Kelch-like 22 (Drosophila)
1456329_at	3.171	A230098A12Rik	RIKEN cDNA A230098A12 gene
1456481_at	3.169	D9Ertd280e	hypothetical protein D930024E11
1418486_at	3.073	Edg2	Endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2
1449364_at	3.066	Aurkc	Aurora kinase C
1438682_at	3.054	Pik3r1	Hypothetical protein C530050K14 (C530050K14), mRNA
1432269_a_at	2.995	Sh3kbp1	SH3-domain kinase binding protein 1
1439747_at	2.987	Ptges	prostaglandin E synthase
1460204_at	2.974	Tsc2	Tuberous sclerosis 2
1450624_at	2.955	Surf4	Surfeit gene 4
1419959_s_at	2.882	C330003B14Rik	RIKEN cDNA C330003B14 gene
1435743_at	2.882	C130068N17Rik	RIKEN cDNA C130068N17 gene
1449925_at	2.88	Cxcr3	Chemokine (C-X-C motif) receptor 3
1416674_at	2.862	Lyzs	Lysozyme
1438333_at	2.833	A230098A12Rik	RIKEN cDNA A230098A12 gene
1424194_at	2.82	Rcsd1	RCSD domain containing 1
1448000_at	2.804	Cdca3	AV352659 RIKEN full-length enriched, 11 days embryo gonad Mus musculus cDNA clone 7030413D12 3′, mRNA sequence.
1429074_at	2.771	Eif5a2	Eukaryotic translation initiation factor 5A2
1428097_at	2.771	2510009E07Rik	RIKEN cDNA 2510009E07 gene, mRNA (cDNA clone IMAGE:6491720), partial cds
1426589_at	2.722	Gab3	growth factor receptor bound protein 2-associated protein 3
1460287_at	2.712	Timp2	Tissue inhibitor of metalloproteinase 2
1453622_s_at	2.699	Mllt3	Myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog (Drosophila); synonyms: Af9, D4Ertd321e, 2210011H10Rik, 2610012I03Rik, 3830408D16Rik; isoform 2 is encoded by transcript variant 2; Mus musculus myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog (Drosophila) (Mllt3), transcript variant 2, mRNA.
1424437_s_at	2.696	Mtap4	Microtubule-associated protein 4
1457829_at	2.681	Clgn	Calmegin
1430240_a_at	2.654	Clgn	Calmegin
1447326_s_at	2.638	Zfp261	zinc finger protein 261
1415921_a_at	2.617	Tnf	Tumor necrosis factor
1419106_at	2.611	Tmem97	Transmembrane protein 97
1427195_at	2.61		Transcribed sequence with weak similarity to protein ref:NP_081764.1 (M. musculus) RIKEN cDNA 5730493B19 [Mus musculus]
1419155_a_at	2.597	Sox4	SRY-box containing gene 4
1429959_at	2.585	6620401D04Rik	12 days embryo female ovary cDNA, RIKEN full-length enriched library, clone:6620401D04 product:interleukin 10 receptor, beta, full insert sequence
1439734_at	2.58		Transcribed sequence with weak similarity to protein pir:S12207 (M. musculus) S12207 hypothetical protein
1448470_at	2.578	Sod2	Superoxide dismutase 2, mitochondrial
1443882_at	2.575		Transcribed sequence with weak similarity to protein ref:NP_081764.1 (M. musculus) RIKEN cDNA 5730493B19 [Mus musculus]
1448825_at	2.568	Pdk2	Pyruvate dehydrogenase kinase, isoenzyme 2
1451277_at	2.551	Zfp131	Zinc finger protein 131
1431602_a_at	2.547	1810064L21Rik	RIKEN cDNA A230065J02 gene
1455958_s_at	2.538	9130017A15Rik	RIKEN cDNA 9130017A15 gene
1420832_at	2.535	Klhl22	Kelch-like 22 (Drosophila)
1452141_a_at	2.534	Sepp1	Selenoprotein P, plasma, 1
1452302_at	2.534	Arhgef10	ceroid-lipofuscinosis, neuronal 8
1449450_at	2.532	Ptges	Prostaglandin E synthase
1419602_at	2.524	Hoxa2	Homeo box A2
1458798_at	2.501		Transcribed sequences
1424334_at	2.497	Selpl	Selectin, platelet (p-selectin) ligand
1460337_at	2.454	Sh3kbp1	SH3-domain kinase binding protein 1
1455796_x_at	2.441	Olfm1	olfactomedin 1
1448024_at	2.44	B430320C24Rik	0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030020K21 product:weakly similar to HYPOTHETICAL 13.8 KDA PROTEIN [Homo sapiens], full insert sequence
1417605_s_at	2.411	St3gal2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2
1460206_at	2.406	Mybbp1a	MYB binding protein (P160) 1a
1450673_at	2.398	Col9a2	Procollagen, type IX, alpha 2
1429483_at	2.395	Ndp52l1	H3048G12-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3048G12 3′, mRNA sequence.
1435740_at	2.377	E330020C23	hypothetical protein E330020C23
1454752_at	2.371	AI606861	Similar to dJ259A10.1 (ssDNA binding protein (SEB4D)) (LOC380843), mRNA
1448147_at	2.365	Tnf	Tumor necrosis factor
1433844_a_at	2.362	Dusp9	dual specificity phosphatase 9
1439810_s_at	2.358	Pramel7	preferentially expressed antigen in melanoma like 7
1420924_at	2.353	Timp2	Tissue inhibitor of metalloproteinase 2
1433795_at	2.352	Tgfbr3	18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110036H20 product:unknown EST, full insert sequence
1420774_a_at	2.343	4930570C03Rik	RIKEN cDNA 4930570C03 gene
1434856_at	2.342	A130096K20	hypothetical protein A130096K20
1432331_a_at	2.338	Prrx2	Paired related homeobox 2
1418517_at	2.323	Gja4	Gap junction membrane channel protein alpha 4
1454877_at	2.315	Sertad4	16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130018M11 product:unclassifiable, full insert sequence
1454727_at	2.296	AI173486	expressed sequence AI173486
1425212_a_at	2.289	Tnf	Tumor necrosis factor
1417625_s_at	2.281	Cmkor1	Chemokine orphan receptor 1
1433575_at	2.281	Sox4	SRY-box containing gene 4
1448727_at	2.277	Bcl10	B-cell leukemia/lymphoma 10
1419276_at	2.255	Enpp1	Ectonucleotide pyrophosphatase/phosphodiesterase 1
1452861_at	2.245	2010300C02Rik	RIKEN cDNA 2010300C02 gene
1456210_at	2.241		Transcribed sequences
1433845_x_at	2.226	Dusp9	dual specificity phosphatase 9
1430650_at	2.223	Zfp191	zinc finger protein 191
1460570_at	2.217	2900019M05Rik	piggyBac transposable element derived 5
1447537_at	2.217	1500032P08Rik	properdin factor, complement
1419301_at	2.216	Fzd4	602109129F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE:4237519 5′, mRNA sequence.
1419309_at	2.213	Pdpn	Podoplanin
1417794_at	2.197	Casp2	Caspase 2
1427401_at	2.185	Chrna5	cholinergic receptor, nicotinic, alpha polypeptide 5
1458878_at	2.175	Yes	Yamaguchi sarcoma viral (v-yes) oncogene homolog
1434277_a_at	2.171	6430570G24	Adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430570G24 product:unknown EST, full insert sequence
1435342_at	2.17	Kcnk6	potassium inwardly-rectifying channel, subfamily K, member 6
1450839_at	2.167	D0H4S114	DNA segment, human D4S114
1419157_at	2.159	Sox4	SRY-box containing gene 4
1434528_at	2.15	Aard	alanine and arginine rich domain containing protein
1449110_at	2.146	App	Amyloid beta (A4) precursor protein
1454737_at	2.143	Dusp9	dual specificity phosphatase 9
1419693_at	2.143	Colec12	Collectin sub-family member 12
1450992_a_at	2.136	Meis1	myeloid ecotropic viral integration site 1
1426514_at	2.133	Agrin	Agrin
1417604_at	2.13	St3gal2	ST3 beta-galactoside alpha-2,3-sialyltransferase 2
1418709_at	2.126	Adarb1	Adenosine deaminase, RNA-specific, B1
1426785_s_at	2.124	Mgll	monoglyceride lipase
1449449_at	2.118	Ptges	Prostaglandin E synthase
1453836_a_at	2.112	Mgll	Monoglyceride lipase
1422088_at	2.102	Lmyc1	lung carcinoma myc related oncogene 1
1424951_at	2.089	Cacna1d	Calcium channel, voltage-dependent, L type, alpha 1D subunit
1454082_a_at	2.076	Giyd2	GIY-YIG domain containing 2
1419156_at	2.073	Sox4	SRY-box containing gene 4
1452888_at	2.061	1110034G24Rik	RIKEN cDNA 1110034G24 gene
1417129_a_at	2.059	Mrg1	Myeloid ecotropic viral integration site-related gene 1
1418617_x_at	2.05	Clgn	Calmegin
1426869_at	2.05	Boc	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
1460378_a_at	2.04	Myb; Tes	Myeloblastosis oncogene; synonyms: TESS, Tes1, Tes2, testin2, D6Ertd352e; isoform 2 is encoded by transcript variant 2; testin 2; Mus musculus testis derived transcript (Tes), transcript variant 2, mRNA.
1418505_at	2.036	Ogdh	Oxoglutarate dehydrogenase (lipoamide)
1434069_at	2.035	BC067047	Adult male testis cDNA, RIKEN full-length enriched library, clone:4930413J11 product:mitochondria located 1 homolog (human), full insert sequence
1442180_at	2.026	BC038059	cDNA sequence BC038059
1455642_a_at	2.023	Fbxo23	F-box only protein 23
1426991_at	2.016	1810048J11Rik	RIKEN cDNA 1810048J11 gene
1459818_x_at	2.014	Zfp261	zinc finger protein 261
1434756_at	2.013	5430421B17	frizzled homolog 4 (Drosophila)
1456475_s_at	2.01	Prkar2b	protein kinase, cAMP dependent regulatory, type II beta
1442308_at	2.006	Smyd4	SET and MYND domain containing 4
1418872_at	0.499	Arsk	Arylsulfatase K
1416967_at	0.499	Sox2	SRY-box containing gene 2
1458277_at	0.498	Ccl25	chemokine (C-C motif) ligand 25
1424652_at	0.498	Kctd10	Potassium channel tetramerisation domain containing 10
1435436_at	0.497		Transcribed sequences
1443822_s_at	0.497	D10Ertd214e	DNA segment, Chr 10, ERATO Doi 214, expressed
1450728_at	0.496	Fjx1	AV230815 RIKEN full-length enriched, 0 day neonate skin Mus musculus cDNA clone 4632401J20 3′, mRNA sequence.
1450282_at	0.496	Fgf4	Fibroblast growth factor 4
1421052_a_at	0.492	Sms	Spermine synthase
1430780_a_at	0.491	Pmm1	phosphomannomutase 1
1428775_at	0.491	1110008L16Rik	RIKEN cDNA 1110008L16 gene
1416605_at	0.49	Prkcbp1	Protein kinase C binding protein 1
1416505_at	0.489	Nr4a1	Nuclear receptor subfamily 4, group A, member 1
1447703_x_at	0.489	3110024A21Rik	AV214133 RIKEN full-length enriched, ES cells Mus musculus cDNA clone 2410133J07 3′, mRNA sequence.
1447934_at	0.488	9630033F20Rik	RIKEN cDNA 9630033F20 gene
1420964_at	0.488	Enc1	ectodermal-neural cortex 1
1451026_at	0.487	Ftsj3	FtsJ homolog 3 (E. coli)
1459658_at	0.487	Mcm5	minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)
1428869_at	0.486	Nolc1	nucleolar and coiled-body phosphoprotein 1
1421260_a_at	0.484	Pgk1	Phosphoglycerate kinase 1
1428069_at	0.483	Ubqln1	Ubiquilin 1
1444883_at	0.482	Tmem19	L0079C06-3 NIA Mouse E12.5 Female Mesonephros and Gonads cDNA Library Mus musculus cDNA clone L0079C06 3′, mRNA sequence.
1430433_at	0.481	4933406J08Rik	RIKEN cDNA 4933406J08 gene
1450928_at	0.481	Idb4	inhibitor of DNA binding 4
1445924_at	0.48		Transcribed sequence with weak similarity to protein ref:NP_060730.1 (H. sapiens) hypothetical protein FLJ10891 [Homo sapiens]
1441243_at	0.478		Transcribed sequence with weak similarity to protein ref:NP_081764.1 (M. musculus) RIKEN cDNA 5730493B19 [Mus musculus]
1452609_at	0.477	1190005I06Rik	RIKEN cDNA 1190005I06 gene
1418649_at	0.477	Egln3	EGL nine homolog 3 (C. elegans)
1448272_at	0.477	Btg2	B-cell translocation gene 2, anti-proliferative
1444390_at	0.476		Transcribed sequences
1453251_at	0.476	Tyrp1	Tyrosinase-related protein 1
1435367_at	0.476	Mapk4	mitogen-activated protein kinase 4
1417725_a_at	0.475	Mtvr2	Mammary tumor virus receptor 2
1430208_at	0.474	Pir	Pirin
1421113_at	0.474	Whrn	Whirlin
1448566_at	0.469	Cdc42	Cell division cycle 42 homolog (S. cerevisiae)
1415938_at	0.469	Spink3	Serine peptidase inhibitor, Kazal type 3
1422786_at	0.469	Slc30a1	Solute carrier family 30 (zinc transporter), member 1
1431193_at	0.464	2610524B04Rik	RIKEN cDNA 4932409F03 gene
1454197_a_at	0.464	Calb1	Calbindin-28K
1427640_a_at	0.463	Runx1t1	Runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
1424880_at	0.463	Trib1	tribbles homolog 1 (Drosophila)
1451123_at	0.462	D19Wsu12e	DNA segment, Chr 19, Wayne State University 12, expressed
1429937_at	0.461	AI662478; BB238373; 1700010I21Rik	RIKEN cDNA D530033C11 gene
1417780_at	0.459	Lass4	longevity assurance homolog 4 (S. cerevisiae)
1428377_at	0.459	Btbd11	BTB (POZ) domain containing 11
1429123_at	0.457	Rab27a	RAB27A, member RAS oncogene family
1419700_a_at	0.455	Prom1	Prominin 1
1436865_at	0.454	F630021I08Rik	RIKEN cDNA F630021I08 gene
1433959_at	0.454	9630048M01Rik	RIKEN cDNA 9630048M01 gene
1456296_at	0.453	5832426L23Rik	RIKEN cDNA 5832426L23 gene
1455890_x_at	0.453	Snrpn	small nuclear ribonucleoprotein N
1444292_at	0.453	D7Ertd143e	NACHT, LRR and PYD containing protein 12
1437554_at	0.452	Plec1	plectin 1
1436319_at	0.452	Sulf1	sulfatase 1
1423748_at	0.452	B830012B01; D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1
1423259_at	0.451	Idb4	inhibitor of DNA binding 4
1434815_a_at	0.45	AI874665	mq46b10.x1 Soares_thymus_2NbMT Mus musculus cDNA clone IMAGE:581755 3′, mRNA sequence.
1419708_at	0.45	Wnt6	Wingless-related MMTV integration site 6
1427023_at	0.449	Phyhipl	RIKEN cDNA 4921522K17 gene
1449484_at	0.449	Hfe2	Hemochromatosis type 2 (juvenile) (human homolog)
1449187_at	0.448	Pdgfa	BB371842 RIKEN full-length enriched, 16 days embryo head Mus musculus cDNA clone C130061I20 3′, mRNA sequence.
1447181_s_at	0.446	Slc7a7	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
1424310_at	0.446	Mocs2	molybdenum cofactor synthesis 2
1443435_at	0.445		Transcribed sequences
1423786_at	0.444	Eif2c3	Eukaryotic translation initiation factor 2C, 3
1424643_at	0.444	Tcof1	Treacher Collins Franceschetti syndrome 1, homolog
1428549_at	0.443	Ccdc3	coiled-coil domain containing 3
1426041_a_at	0.442	Bre; Fgd4	Brain and reproductive organ-expressed protein; synonyms: Frabp, ZFYVE6, 9030023J02Rik, 9330209B17Rik; isoform beta is encoded by transcript variant beta; frabin; Fgd1-related F-actin-binding protein; Mus musculus FYVE, RhoGEF and PH domain containing 4 (Fgd4), transcript variant beta, mRNA.; isoform gamma is encoded by transcript variant gamma; Mus musculus FYVE, RhoGEF and PH domain containing 4 (Fgd4), transcript variant gamma, mRNA.
1449996_a_at	0.441	Hspa8	Heat shock protein 8
1449031_at	0.441	Cited1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
1420086_x_at	0.436	Fgf4	fibroblast growth factor 4
1429442_at	0.433	4921503C21Rik	RIKEN cDNA 4921503C21 gene
1422887_a_at	0.432	Ctbp2
1449146_at	0.431	Notch4	Notch gene homolog 4 (Drosophila)
1427537_at	0.428	EPIPL; EPIPL1; 6230424I18Rik	epiplakin 1
1443241_at	0.427		13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530023N15 product:unclassifiable, full insert sequence
1417392_a_at	0.426	My+lat1; AI790233	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
1417061_at	0.426	Cdc42	Cell division cycle 42 homolog (S. cerevisiae)
1427364_a_at	0.423	Odc1	Ornithine decarboxylase, structural 1
1448931_at	0.421	F2rl1	Coagulation factor II (thrombin) receptor-like 1
1448568_a_at	0.418	Keap1	Kelch-like ECH-associated protein 1
1434705_at	0.417	D7Wsu87e	TRAF-binding protein
1451527_at	0.417	Pcolce2	Procollagen C-endopeptidase enhancer 2
1428283_at	0.412	Cyp2s1	Cytochrome P450, family 2, subfamily s, polypeptide 1
1434239_at	0.411	AA408556	expressed sequence AA408556
1453072_at	0.411	Gpr160	G protein-coupled receptor 160
1452384_at	0.411	Enpp3	ectonucleotide pyrophosphatase/phosphodiesterase 3
1415944_at	0.411	Sdc1	syndecan 1
1427302_at	0.409	Enpp3	ectonucleotide pyrophosphatase/phosphodiesterase 3
1423747_a_at	0.409	B830012B01; D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1
1418744_s_at	0.407	Musk	Muscle, skeletal, receptor tyrosine kinase
1448688_at	0.406	Podxl	Podocalyxin-like
1436227_at	0.4	Ebaf	endometrial bleeding associated factor
1431425_a_at	0.399	4930535B03Rik	RIKEN cDNA 4930535B03 gene
1451502_at	0.394	Pla2g10	Phospholipase A2, group X
1444458_at	0.393		Transcribed sequence with moderate similarity to protein pir:S12207 (M. musculus) S12207 hypothetical protein
1422912_at	0.392	Bmp4	Bone morphogenetic protein 4
1433733_a_at	0.39	Cry1	cryptochrome 1 (photolyase-like)
1434458_at	0.388	Fst	follistatin
1438160_x_at	0.379	Slco4a1	AV348121 RIKEN full-length enriched, adult male olfactory bulb Mus musculus cDNA clone 6430631M08 3′, mRNA sequence.
1449455_at	0.375	Ehd4	EH-domain containing 4
1442379_at	0.37		Transcribed sequences
1455692_x_at	0.37	1700097N02Rik	Adult male testis cDNA, RIKEN full-length enriched library, clone:1700122G02 product:unknown EST, full insert sequence
1449109_at	0.365	Socs2	Suppressor of cytokine signaling 2
1420085_at	0.36	Fgf4	fibroblast growth factor 4
1436562_at	0.359	Ddx58	RIKEN cDNA 6430573D20 gene
1416316_at	0.355	Slc27a2	Solute carrier family 27 (fatty acid transporter), member 2
1438861_at	0.349	Bnc2	RIKEN cDNA 5031434M05 gene
1449231_at	0.349	1110008L16Rik	RIKEN cDNA 1110008L16 gene
1432418_a_at	0.342	Ckmt1	Creatine kinase, mitochondrial 1, ubiquitous
1421385_a_at	0.339	Zfp191	Zinc finger protein 191
1424531_a_at	0.331	Tcea3	Transcription elongation factor A (SII), 3
1452004_at	0.325	Calca	Calcitonin/calcitonin-related polypeptide, alpha
1443786_at	0.321	Utf1	BB000218 RIKEN full-length enriched, ES cells XhoI/SstI Mus musculus cDNA clone 2410014O14 3′ similar to NM_009482 Mus musculus undifferentiated embryonic cell transcription factor 1 (Utf1), mRNA sequence.
1438084_at	0.32		Transcribed sequences
1450771_at	0.319	Dgcr2	DiGeorge syndrome critical region gene 2
1417745_at	0.318	Hnrpu	Heterogeneous nuclear ribonucleoprotein U
1437004_at	0.318	C78977	Similar to tripartite motif-containing 43 (LOC236469), mRNA
1416899_at	0.317	Utf1	Undifferentiated embryonic cell transcription factor 1
1426673_at	0.315	Cdh3	Cadherin 3
1425284_a_at	0.314	Ash; 2210402C08Rik; 2410003M20Rik; 4933437C11Rik	RAB27A, member RAS oncogene family
1422952_at	0.308	Ng23
1440563_at	0.299		15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930010N06 product:unknown EST, full insert sequence
1426431_at	0.294	Jag2	AV264681 RIKEN full-length enriched, adult male testis (DH10B) Mus musculus cDNA clone 4930502C11 3′ similar to Y14331 Mus musculus partial mRNA for jagged2 protein, clone MB16, mRNA sequence.
1416630_at	0.289	Id3	Inhibitor of DNA binding 3
1432018_at	0.287	Mas1	MAS1 oncogene
1439260_a_at	0.286	Enpp3	BB039510 RIKEN full-length enriched, 13 days embryo male testis Mus musculus cDNA clone 6030443A19 3′, mRNA sequence.
1459469_at	0.28	C78516	Transcribed sequences
1437588_at	0.279	Pou4f2	POU domain, class 4, transcription factor 2
1426808_at	0.278	Lgals3	Lectin, galactose binding, soluble 3
1419930_at	0.271	D15Ertd55e	Transcribed sequences
1450194_a_at	0.27	c-myb; M16449; AI550390; MGC18531; Myb	myeloblastosis oncogene; synonyms: c-myb, M16449, AI550390, MGC18531; isoform 2 is encoded by transcript variant 2; myb protein; tumor-specific myb protein; Mus musculus myeloblastosis oncogene (Myb), transcript variant 2, mRNA.
1438068_at	0.269		BB251859 RIKEN full-length enriched, 7 days neonate cerebellum Mus musculus cDNA clone A730048G08 3′, mRNA sequence.
1450989_at	0.269	Tdgf1	teratocarcinoma-derived growth factor
1425926_a_at	0.269	Otx2	Orthodenticle homolog 2 (Drosophila)
1423232_at	0.256	Map2k5	Mitogen activated protein kinase kinase 5
1440867_at	0.251	Spry4	sprouty homolog 4 (Drosophila)
1439746_at	0.246	C130085G02Rik	RIKEN cDNA C130085G02 gene
1421317_x_at	0.245	c-myb; M16449; AI550390; MGC18531; Myb	myeloblastosis oncogene; synonyms: c-myb, M16449, AI550390, MGC18531; isoform 2 is encoded by transcript variant 2; myb protein; tumor-specific myb protein; Mus musculus myeloblastosis oncogene (Myb), transcript variant 2, mRNA.
1422021_at	0.244	Spry4	sprouty homolog 4 (Drosophila)
1438824_at	0.234	Slc20a1	solute carrier family 20, member 1
1424942_a_at	0.219	Myc	Myelocytomatosis oncogene
1445669_at	0.217	Spry4	sprouty homolog 4 (Drosophila)
1450177_at	0.217	Ngfr	nerve growth factor receptor (TNFR superfamily, member 16)
1449064_at	0.212	Mab21l2	Mab-21-like 2 (C. elegans)
1430086_at	0.202	Chrna9	cholinergic receptor, nicotinic, alpha polypeptide 9
1436657_at	0.202		LOC380738 (LOC380738), mRNA
1453345_at	0.196	3830408G10Rik	RIKEN cDNA 3830408G10 gene
1454974_at	0.151	Ntn1	syntaxin 8
1423378_at	0.135	Adam23	a disintegrin and metalloprotease domain 23
1444823_at	0.131		Transcribed sequences
1420463_at	0.0989	Clnk	Cytokine-dependent hematopoietic cell linker
1457402_at	0.0939		0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030031B17 product:unknown EST, full insert sequence
1431711_a_at	0.0812	Apbb2	Amyloid beta (A4) precursor protein-binding, family B, member 2