Table 1.
GENE† | OMIM | NUCLEOTIDE | AMINO ACID | ZYGOSITY | PUTATIVE LOCATION IN PROTEIN | SAMPLE |
---|---|---|---|---|---|---|
PLXNA4 | 604280 | c.1920G>C | p.K640N | heterozygous | Sema domain | 11A (melanoma) |
c.3460G>A | p.E1154K | heterozygous | Extracellular, Interdomain between PSI domains 2 and 3 | 16A (melanoma) | ||
c.5206C>T | p.H1736Y | heterozygous | Cytoplasmic domain | 14A (melanoma) | ||
PLXNB3 | 300214 | c.1613G>A | p. R538H | heterozygous | Extracellular, Interdomain between PSI domains 1 and 2 | 384 (PDAC) |
PLXNC1 | 604259 | c.1204+1G>T | splice var. | heterozygous | Intronic, potentially affects splicing* | 18A* (melanoma) |
c.1475A>T | p.N492I | heterozygous | Extracellular, PSI domain 1 | 370 (PDAC) | ||
c.2554G>A | p.E852K | heterozygous | Extracellular, second IPT domain | 375 (PDAC) |
List of the seven mutations found in the coding sequence of PLXNA4, PLXNB3 and PLXNC1. The position of nucleotide mutations corresponds to that in the coding sequence of each gene, where position 1 is the A of ATG initiation codon. Zygosity of the mutations is shown.
PLXNC1 was also mutated in the splice donor site flanking exon 2 in melanoma sample 18A (c.1204+1G>T).
GenBank accession numbers for plexins with mutations are: PLXNA4 (NM_020911.1), PLXNB3 (NM_005393.1) and PLXNC1 (NM_005761.1).