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. Author manuscript; available in PMC: 2010 Nov 22.
Published in final edited form as: Proteomics Clin Appl. 2009 Nov 1;3(11):1288–1295. doi: 10.1002/prca.200900005

Table 3.

Mitochondrial protein changes related to paclitaxel quantified by iTRAQ were also measured by label-free quantitation methods

IPI ProteinName Swiss-Prot methods OFF+T/OFF−T ON−T/OFF−T ON+T/OFF−T
IPI00002520 Serine hydroxymethyltransferase, mitochondrial P34897 iTRAQ 1.79 1.13 1.34
IPI00219291 ATP synthase f chain, mitochondrial P56134 iTRAQ 1.73 1.15 1.73
LC-MS 1.70 1.16 1.99
IPI00029557 GrpE protein homolog 1, mitochondrial Q9HAV7 iTRAQ 1.65 1.30 1.46
IPI00009960 Mitochondrial inner membrane protein Q16891 iTRAQ 1.64 1.20 1.05
IPI00215916 cytochrome c P00001 iTRAQ 1.61 1.21 1.73
LC-MS 1.19 1.00 1.27
IPI00031522 Trifunctional enzyme alpha subunit, mitochondrial P40939 iTRAQ 1.55 0.80 1.19
SC 3.01 3.00 6.06
IPI00014230 Complement component 1, mitochondrial Q07021 iTRAQ 1.47 1.17 1.25
SC 1.59 0.60 0.40
IPI00024919 Thioredoxin-dependent peroxide reductase, mitochondrial P30048 iTRAQ 1.40 1.05 1.39
SC 1.25 0.50 1.00
IPI00024993 Enoyl-CoA hydratase, mitochondrial P30084 iTRAQ 1.38 0.81 1.12
SC 1.67 1.33 1.33
IPI00329351 60 kDa heat shock protein, mitochondrial P10809 iTRAQ 1.33 1.05 1.31
IPI00007765 Stress-70 protein, mitochondrial P38646 iTRAQ 1.33 1.05 1.12
LC-MS 1.71 1.21 1.47
SC 1.75 1.50 1.65
IPI00021785 Cytochrome c oxidase polypeptide Vb, mitochondrial P10606 iTRAQ 1.31 1.38 2.03
IPI00304802 Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial P36957 iTRAQ 1.31 0.92 1.23
IPI00022793 Trifunctional enzyme beta subunit, mitochondrial P55084 iTRAQ 1.30 1.29 1.35