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. 2010 Oct 19;22(10):3218–3231. doi: 10.1105/tpc.110.077727

Table 3.

Genotyping of drp2 Insertional Alleles

drp2 Allele Line Insert Position Left Primer Right Primer
drp2a-1 SALK_071036 2246 1164 1165
drp2a-3 SALK_011319 3979 1171 1172
drp2a-4 SALK_018859 1374 858 1165
drp2b-1 SALK_003049 7145 865 1056
drp2b-2 SALK_134887 1120 1161 1160
drp2b-3 SALK_124686 6396 861 865
drp2b-4 WISCDSLOX_256E05 255 1162 1163
drp2b-5 SALK_041330 1305 1160 1161

The T-DNA insert was detected by PCR amplification of total genomic DNA preps using a T-DNA primer (774 for line drp2b-4 and 926 for all other lines) in combination with the left primer; the absence of the insert (to distinguish heterozygous from homozygous plants) was detected by amplification using the left and right primers. The exact position of the insert (number of bases 5′ of ATG in genomic sequence) was determined by direct sequencing of the genotyping PCR reaction. Primer sequences are listed in Supplemental Table 2 online.