Table 1. BP mapping in long AGEZ-containing introns.
Gene name | Exon/length (nt) | AGEZ length (nt) | Candidates in AGEZ (N) | BP position (nt) | BP sequence | MM1 ranking | SVM ranking |
MBNL1 | 6/54 | 173 | 11 | −141 | cgatgAttt | 5 | 2 |
−144 | ttccgAtga * | - | - | ||||
8/36 | 134 | 13 | −51 | ttttaAttc | 6 | 4 | |
−64 | gtgtgAtgg | 3 | 2 | ||||
9/95 | 224 | 14 | −31 | gctacActc * | - | - | |
−41 | tctgtAtgt * | - | - | ||||
−229 | tggtaAcaa | 1 | 1 | ||||
CLK1 | 4/91 | 235 | 17 | −224 | atctgAaaa | 9 | 4 |
−229 | atcttAtct | 14 | 10 | ||||
CLK3 | 4/97 | 207 | 11 | −196 | tcttgAcgt | 3 | 2 |
HTR4 | 3/201 | 149 | 5 | −143 | atgtgActt | 3 | 1 |
−151 | cactaAgca | 1 | 2 | ||||
4/154 | 291 | 11 | −27 | tgcctAtgc * | - | - | |
−33 | tgcccAtgc * | - | - | ||||
−72 | ctctcAtat | 3 | 5 | ||||
−267 | taatcActt | 4 | 1 | ||||
−273 | attatAtaa * | - | - | ||||
5/569 | 221 | 10 | −26 | tcctcAttt | 3 | 9 | |
−39 | tttttAcct | 7 | 10 | ||||
−213 | tgctgAtaa | 2 | 1 | ||||
g/76 | 101 | 6 | −31 | ccctcAtct | 2 | 2 | |
−86 | tactaAtct | 1 | 1 |
*non-canonical BP.