Table 2.
Weighted allele frequencies of polymorphisms examined in study participants, NHANES III DNA bank (1991-1994)
Non-Hispanic whites (N = 2249) |
Non-Hispanic blacks (N = 1502) |
Mexican Americans (N = 1570) |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Gene | Variant | Type/locationa | Alleles | Frequencyb (%) | HWP P-value |
Frequency (%) | HWP P-value |
Frequency (%) | HWP P-value |
P-valuec |
ADRB2 | rs1042713 | Arg16Gly | A/G | 38.7 | 0.4558 | 49.8 | 0.8106 | 40.7 | 0.3089 | < 0.0001 |
rs1042714 | Gln27Glu | G/C | 41.6 | 0.8470 | 17.7 | 0.5914 | 21.7 | 0.8367 | < 0.0001 | |
APOE | rs429358 | Cys130Arg | C/T | 15.1 | 0.4694 | 22.1 | 0.4997 | 10.9 | 0.0177 | 0.0002 |
rs7412 | Arg176Cys | T/C | 8.2 | 0.7409 | 10.2 | 0.1013 | 3.5 | 0.4721 | 0.0004 | |
CAT | rs769214 | -843 | G/A | 33.9 | 0.8337 | 41.0 | 0.3725 | 50.2 | 0.4067 | < 0.0001 |
CCL5 | rs2280788 | -95 | G/C | 3.0 | 0.0233 | 0.7 | 0.8085 | 1.2 | 0.6867 | < 0.0001 |
CCR2 | rs1799864 | Val64Ile | A/G | 9.5 | 0.3895 | 14.7 | 0.0828 | 22.0 | 0.8849 | < 0.0001 |
CRP | rs1205 | 3'UTR | A/G | 34.3 | 0.0620 | 21.1 | 0.0210 | 35.2 | 0.3485 | < 0.0001 |
rs1417938 | intronic | T/A | 29.9 | 0.4841 | 11.8 | 0.9060 | 34.1 | 0.2799 | < 0.0001 | |
rs1800947 | Leu184Leu | C/G | 2.9 | 0.5732 | 0.8 | 0.7876 | 2.1 | 0.4574 | 0.0004 | |
rs2808630 | downstream of gene | G/A | 28.5 | 0.8126 | 16.8 | 0.2494 | 21.8 | 0.4448 | < 0.0001 | |
rs3091244 | -389 | A/C | 6.4 | 0.6077 | 26.3 | 0.7876 | 4.8 | 0.3901 | < 0.0001 | |
T/C | 30.6 | 27.8 | 35.7 | |||||||
rs3093058 | promoter | T/A | 0.3 | 0.9146 | 15.9 | 0.8973 | 1.7 | 0.2351 | < 0.0001 | |
rs3093066 | 3' UTR | A/C | 0.7 | 0.7812 | 22.3 | 0.9172 | 1.5 | 0.5234 | < 0.0001 | |
rs35500644 | Thr35Thr | C/A | --d | 2.0 | 0.5503 | -- | 0.0003 | |||
rs11265260 | upstream of gene | G/A | 6.1 | 0.6833 | 7.1 | 0.6120 | 3.9 | 0.8988 | 0.0057 | |
rs12093699 | downstream of gene | A/G | 30.5 | 0.4361 | 31.7 | 0.4314 | 34.8 | 0.5947 | 0.0286 | |
rs12744244 | downstream of gene | A/C | 20.5 | 0.5659 | 4.3 | 0.2859 | 13.2 | 0.3447 | < 0.0001 | |
rs2027471 | upstream of gene | A/T | 34.5 | 0.2198 | 22.6 | 0.0701 | 36.9 | 0.3717 | < 0.0001 | |
rs2592887 | downstream of gene | A/G | 40.4 | 0.5556 | 49.0 | 0.9909 | 40.6 | 0.6631 | < 0.0001 | |
rs2794520 | downstream of gene | A/G | 33.6 | 0.2538 | 22.8 | 0.0354 | 35.5 | 0.7546 | < 0.0001 | |
rs3093075 | downstream of gene | A/C | 6.6 | 0.4684 | 26.2 | 0.9300 | 4.7 | 0.9636 | < 0.0001 | |
F2 | rs1799963 | upstream of gene | A/G | 1.2 | 0.5214 | 0.3 | 0.8969 | 1.1 | 0.6927 | 0.0042 |
F5 | rs6025 | Arg534Gln | A/G | 2.6 | 0.6247 | 0.6 | 0.8195 | 0.9 | 0.0101 | < 0.0001 |
FCGR2A | rs1801274 | His166Arg; His167Arg | G/A | 51.1 | 0.0235 | 53.2 | 0.1480 | 52.9 | 0.9579 | 0.1412 |
FGB | rs1800790 | -462 | A/G | 19.2 | 0.9227 | 5.5 | 0.0015 | 15.0 | 0.6910 | < 0.0001 |
GCKR | rs1260326 | Pro446Leu | T/C | 43.3 | 0.3779 | 15.4 | 0.0016 | 34.2 | 0.3443 | < 0.0001 |
IL1B | rs1143623 | -2022 | C/G | 27.8 | 0.9893 | 11.0 | 0.6368 | 43.9 | 0.5735 | < 0.0001 |
IL10 | rs1800871 | -853; -819 | T/C | 24.2 | 0.5168 | 39.3 | 0.9181 | 37.8 | 0.0123 | < 0.0001 |
rs1800872 | -626; -592 | A/C | 24.4 | 0.4456 | 38.9 | 0.6244 | 37.7 | 0.0145 | < 0.0001 | |
rs1800896 | -1116; -1082 | G/A | 46.9 | 0.5030 | 35.6 | 0.3431 | 30.5 | 0.5009 | < 0.0001 | |
IL4 | rs2243248 | -1098 | G/T | 7.5 | 0.4678 | 15.6 | 0.6580 | 12.3 | 0.0577 | < 0.0001 |
rs2243250 | -588; -524; -590 |
T/C | 16.1 | 0.6836 | 64.7 | 0.1552 | 43.2 | 0.2281 | < 0.0001 | |
rs2243270 | intronic | G/A | 16.5 | 0.5225 | 64.1 | 0.0082 | 42.7 | 0.2506 | < 0.0001 | |
IL4R | rs1801275 | Gln576Arg | G/A | 21.3 | 0.7231 | 67.7 | < 0.0001 | 28.6 | 0.5716 | < 0.0001 |
rs1805015 | Ser503Pro | C/T | 16.3 | 0.6704 | 36.4 | 0.9842 | 15.5 | 0.2848 | < 0.0001 | |
ITGB3 | rs5918 | Leu59Pro | C/T | 16.6 | 0.8121 | 9.8 | 0.9417 | 9.8 | 0.0677 | < 0.0001 |
MBL2 | rs11003125 | -618; -550 | G/C | 35.8 | 0.8188 | 13.4 | 0.3698 | 51.3 | 0.4876 | < 0.0001 |
rs1800450 | Gly54Asp | A/G | 14.4 | 0.0333 | 3.5 | 0.0388 | 14.4 | 0.4665 | < 0.0001 | |
rs1800451 | Gly57Glu | A/G | 2.1 | 0.1373 | 23.3 | 0.0131 | 2.8 | 0.2854 | < 0.0001 | |
rs5030737 | Arg52Cys | T/C | 6.8 | 0.5280 | 1.0 | 0.7461 | 2.5 | 0.0514 | < 0.0001 | |
rs7096206 | -289; -221 | C/G | 22.5 | 0.2505 | 14.9 | 0.6554 | 11.0 | 0.0133 | < 0.0001 | |
NOS2A | rs1800482 | promoter | C/G | -- | 6.7 | 0.4602 | 0.3 | < 0.0001 | < 0.0001 | |
rs9282799 | -2892; -1173 | T/C | 0.0 | 0.9579 | 4.5 | 0.5776 | 0.2 | 0.9494 | < 0.0001 | |
NOS3 | rs1799983 | Asp298Glu | T/G | 32.6 | 0.3242 | 13.2 | 0.1706 | 19.4 | 0.1261 | < 0.0001 |
rs2070744 | -786 | C/T | 39.2 | 0.5881 | 15.6 | 0.0190 | 24.2 | 0.0251 | < 0.0001 | |
PON1 | rs662 | Gln192Arg | G/A | 32.2 | 0.5369 | 67.3 | 0.9505 | 46.6 | 0.1891 | < 0.0001 |
rs854560 | Leu55Met | A/T | 35.2 | 0.3791 | 18.0 | 0.4022 | 22.7 | 0.7799 | < 0.0001 | |
PPARG | rs1801282 | Pro12Ala | G/C | 13.5 | 0.9051 | 2.7 | 0.9100 | 12.3 | 0.5137 | < 0.0001 |
SERPINE1 | rs1799762 | ins/del in promoter | 4G/5G | 53.0 | 0.6712 | 26.7 | 0.2376 | 33.5 | 0.4660 | < 0.0001 |
TGFB1/B9D2 | rs1800468 | -800 | A/G | 7.8 | 0.8588 | 2.9 | 0.8929 | 5.0 | 0.6573 | < 0.0001 |
rs1800469 | -509 | T/C | 31.6 | 0.7314 | 24.6 | 0.8500 | 44.2 | 0.2589 | < 0.0001 | |
rs1800470 | Pro10Leu | C/T | 38.7 | 0.2483 | 45.8 | 0.5523 | 49.7 | 0.0675 | < 0.0001 | |
TLR4 | rs4986790 | Asp299Gly | G/A | 6.6 | 0.2370 | 7.2 | 0.5877 | 2.6 | 0.2387 | < 0.0001 |
TNF | rs1800629 | -487; -308 | A/G | 17.1 | 0.4636 | 12.6 | 0.6949 | 6.9 | 0.8989 | < 0.0001 |
rs1800750 | -555 | A/G | 1.5 | < 0.0001 | 2.4 | 0.1562 | 2.7 | 0.2652 | 0.0326 | |
rs361525 | -417; -238 | A/G | 5.9 | 0.0156 | 3.8 | 0.8423 | 5.9 | 0.2594 | 0.0040 | |
VDR | rs2239185 | intronic | C/T | 47.9 | 0.0008 | 43.5 | 0.6865 | 58.6 | 0.7644 | < 0.0001 |
rs731236 | Ile352Ile; TaqI | C/T | 38.2 | 0.2444 | 28.7 | 0.5501 | 23.8 | 0.2615 | < 0.0001 | |
Unknown | rs890945 | unknown | A/T | 20.8 | 0.5772 | 29.6 | 0.2610 | 29.9 | 0.8995 | < 0.0001 |
HWP, Hardy-Weinberg proportions; NHANES III, Third National Health and Nutrition Examination Survey.
a) Alternate designations are given, if available. b) Weighted frequencies are presented for the first listed allele. c) Chi-square test of significance of the difference in allele frequency across race/ethnic groups. d) Cannot report due to disclosure concerns (small cell sizes).