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. 2010 Nov 5;11:155. doi: 10.1186/1471-2350-11-155

Table 2.

Weighted allele frequencies of polymorphisms examined in study participants, NHANES III DNA bank (1991-1994)

Non-Hispanic whites
(N = 2249)
Non-Hispanic blacks
(N = 1502)
Mexican Americans
(N = 1570)

Gene Variant Type/locationa Alleles Frequencyb (%) HWP
P-value
Frequency (%) HWP
P-value
Frequency (%) HWP
P-value
P-valuec
ADRB2 rs1042713 Arg16Gly A/G 38.7 0.4558 49.8 0.8106 40.7 0.3089 < 0.0001

rs1042714 Gln27Glu G/C 41.6 0.8470 17.7 0.5914 21.7 0.8367 < 0.0001

APOE rs429358 Cys130Arg C/T 15.1 0.4694 22.1 0.4997 10.9 0.0177 0.0002

rs7412 Arg176Cys T/C 8.2 0.7409 10.2 0.1013 3.5 0.4721 0.0004

CAT rs769214 -843 G/A 33.9 0.8337 41.0 0.3725 50.2 0.4067 < 0.0001

CCL5 rs2280788 -95 G/C 3.0 0.0233 0.7 0.8085 1.2 0.6867 < 0.0001

CCR2 rs1799864 Val64Ile A/G 9.5 0.3895 14.7 0.0828 22.0 0.8849 < 0.0001

CRP rs1205 3'UTR A/G 34.3 0.0620 21.1 0.0210 35.2 0.3485 < 0.0001

rs1417938 intronic T/A 29.9 0.4841 11.8 0.9060 34.1 0.2799 < 0.0001

rs1800947 Leu184Leu C/G 2.9 0.5732 0.8 0.7876 2.1 0.4574 0.0004

rs2808630 downstream of gene G/A 28.5 0.8126 16.8 0.2494 21.8 0.4448 < 0.0001

rs3091244 -389 A/C 6.4 0.6077 26.3 0.7876 4.8 0.3901 < 0.0001


T/C 30.6 27.8 35.7

rs3093058 promoter T/A 0.3 0.9146 15.9 0.8973 1.7 0.2351 < 0.0001

rs3093066 3' UTR A/C 0.7 0.7812 22.3 0.9172 1.5 0.5234 < 0.0001

rs35500644 Thr35Thr C/A --d 2.0 0.5503 -- 0.0003

rs11265260 upstream of gene G/A 6.1 0.6833 7.1 0.6120 3.9 0.8988 0.0057

rs12093699 downstream of gene A/G 30.5 0.4361 31.7 0.4314 34.8 0.5947 0.0286

rs12744244 downstream of gene A/C 20.5 0.5659 4.3 0.2859 13.2 0.3447 < 0.0001

rs2027471 upstream of gene A/T 34.5 0.2198 22.6 0.0701 36.9 0.3717 < 0.0001

rs2592887 downstream of gene A/G 40.4 0.5556 49.0 0.9909 40.6 0.6631 < 0.0001

rs2794520 downstream of gene A/G 33.6 0.2538 22.8 0.0354 35.5 0.7546 < 0.0001

rs3093075 downstream of gene A/C 6.6 0.4684 26.2 0.9300 4.7 0.9636 < 0.0001

F2 rs1799963 upstream of gene A/G 1.2 0.5214 0.3 0.8969 1.1 0.6927 0.0042

F5 rs6025 Arg534Gln A/G 2.6 0.6247 0.6 0.8195 0.9 0.0101 < 0.0001

FCGR2A rs1801274 His166Arg; His167Arg G/A 51.1 0.0235 53.2 0.1480 52.9 0.9579 0.1412

FGB rs1800790 -462 A/G 19.2 0.9227 5.5 0.0015 15.0 0.6910 < 0.0001

GCKR rs1260326 Pro446Leu T/C 43.3 0.3779 15.4 0.0016 34.2 0.3443 < 0.0001

IL1B rs1143623 -2022 C/G 27.8 0.9893 11.0 0.6368 43.9 0.5735 < 0.0001

IL10 rs1800871 -853; -819 T/C 24.2 0.5168 39.3 0.9181 37.8 0.0123 < 0.0001

rs1800872 -626; -592 A/C 24.4 0.4456 38.9 0.6244 37.7 0.0145 < 0.0001

rs1800896 -1116; -1082 G/A 46.9 0.5030 35.6 0.3431 30.5 0.5009 < 0.0001

IL4 rs2243248 -1098 G/T 7.5 0.4678 15.6 0.6580 12.3 0.0577 < 0.0001

rs2243250 -588; -524;
-590
T/C 16.1 0.6836 64.7 0.1552 43.2 0.2281 < 0.0001

rs2243270 intronic G/A 16.5 0.5225 64.1 0.0082 42.7 0.2506 < 0.0001

IL4R rs1801275 Gln576Arg G/A 21.3 0.7231 67.7 < 0.0001 28.6 0.5716 < 0.0001

rs1805015 Ser503Pro C/T 16.3 0.6704 36.4 0.9842 15.5 0.2848 < 0.0001

ITGB3 rs5918 Leu59Pro C/T 16.6 0.8121 9.8 0.9417 9.8 0.0677 < 0.0001

MBL2 rs11003125 -618; -550 G/C 35.8 0.8188 13.4 0.3698 51.3 0.4876 < 0.0001

rs1800450 Gly54Asp A/G 14.4 0.0333 3.5 0.0388 14.4 0.4665 < 0.0001

rs1800451 Gly57Glu A/G 2.1 0.1373 23.3 0.0131 2.8 0.2854 < 0.0001

rs5030737 Arg52Cys T/C 6.8 0.5280 1.0 0.7461 2.5 0.0514 < 0.0001

rs7096206 -289; -221 C/G 22.5 0.2505 14.9 0.6554 11.0 0.0133 < 0.0001

NOS2A rs1800482 promoter C/G -- 6.7 0.4602 0.3 < 0.0001 < 0.0001

rs9282799 -2892; -1173 T/C 0.0 0.9579 4.5 0.5776 0.2 0.9494 < 0.0001

NOS3 rs1799983 Asp298Glu T/G 32.6 0.3242 13.2 0.1706 19.4 0.1261 < 0.0001

rs2070744 -786 C/T 39.2 0.5881 15.6 0.0190 24.2 0.0251 < 0.0001

PON1 rs662 Gln192Arg G/A 32.2 0.5369 67.3 0.9505 46.6 0.1891 < 0.0001

rs854560 Leu55Met A/T 35.2 0.3791 18.0 0.4022 22.7 0.7799 < 0.0001

PPARG rs1801282 Pro12Ala G/C 13.5 0.9051 2.7 0.9100 12.3 0.5137 < 0.0001

SERPINE1 rs1799762 ins/del in promoter 4G/5G 53.0 0.6712 26.7 0.2376 33.5 0.4660 < 0.0001

TGFB1/B9D2 rs1800468 -800 A/G 7.8 0.8588 2.9 0.8929 5.0 0.6573 < 0.0001

rs1800469 -509 T/C 31.6 0.7314 24.6 0.8500 44.2 0.2589 < 0.0001

rs1800470 Pro10Leu C/T 38.7 0.2483 45.8 0.5523 49.7 0.0675 < 0.0001

TLR4 rs4986790 Asp299Gly G/A 6.6 0.2370 7.2 0.5877 2.6 0.2387 < 0.0001

TNF rs1800629 -487; -308 A/G 17.1 0.4636 12.6 0.6949 6.9 0.8989 < 0.0001

rs1800750 -555 A/G 1.5 < 0.0001 2.4 0.1562 2.7 0.2652 0.0326

rs361525 -417; -238 A/G 5.9 0.0156 3.8 0.8423 5.9 0.2594 0.0040

VDR rs2239185 intronic C/T 47.9 0.0008 43.5 0.6865 58.6 0.7644 < 0.0001

rs731236 Ile352Ile; TaqI C/T 38.2 0.2444 28.7 0.5501 23.8 0.2615 < 0.0001

Unknown rs890945 unknown A/T 20.8 0.5772 29.6 0.2610 29.9 0.8995 < 0.0001

HWP, Hardy-Weinberg proportions; NHANES III, Third National Health and Nutrition Examination Survey.

a) Alternate designations are given, if available. b) Weighted frequencies are presented for the first listed allele. c) Chi-square test of significance of the difference in allele frequency across race/ethnic groups. d) Cannot report due to disclosure concerns (small cell sizes).

HHS Vulnerability Disclosure