Table 3.
Performance of genetic algorithm and overall algorithm
| Network | (i) reduced network | (ii) overall network | ||||||
|---|---|---|---|---|---|---|---|---|
| real | pred. | FDR(%) | FNR(%) | real | pred. | FDR(%) | FNR(%) | |
| Yu | 563 | 552 | 43.65 | 44.76 | 1318 | 1390 | 14.96 | 10.31 |
| DIP | 931 | 890 | 35.50 | 38.34 | 1967 | 2041 | 17.34 | 14.23 |
| PAM | 473 | 421 | 49.88 | 55.39 | 1538 | 1462 | 16.14 | 20.28 |
| DM | 1138 | 1295 | 43.39 | 35.58 | 1869 | 1804 | 32.81 | 35.15 |
(i) Performance of the genetic algorithm on the reduced network obtained from removing 1-cut vertices and degree-2 vertices. (ii) Overall performance of the combined prediction pipeline on the complete connectivity matrix. Real and predicted describe the number of edges in the real and predicted networks, respectively.