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. Author manuscript; available in PMC: 2011 Oct 12.
Published in final edited form as: Biochemistry. 2010 Sep 21;49(40):8669–8679. doi: 10.1021/bi100146z

Figure 1.

Figure 1

Three duplexes each containing the same single mismatch-nearest neighbor combination (boxed) at three different duplex positions: (a) 5′-shifted, (b) central, and (c) 3′-shifted. All three duplexes contain the same stem sequence but when shifted between the three different positions, the singe mismatch has different non-nearest neighbors.