Table 1.
NMN | 5′-AMP | 3′-AMP | 2′-AMP | phosphate | |
---|---|---|---|---|---|
Beamline | 24-ID-C | 4.2.2 | 4.2.2 | 4.2.2 | 24-ID-C |
Wavelength | 0.9792 | 1.00 | 1.00 | 1.00 | 0.9792 |
Data collection resolution (Å) | 50 – 1.35 (1.40 – 1.35) | 50 – 1.55 (1.61–1.55) | 50 – 1.85 (1.92 – 1.85) | 50 – 1.90 (1.93 – 1.90) | 50 – 1.40 (1.45 – 1.40) |
No. of observations | 622380 | 944628 | 536096 | 499757 | 340873 |
No. of unique reflections | 66003 | 44418 | 26166 | 24575 | 57486 |
Rmerge(I) | 0.074 (0.603) | 0.088 (0.427) | 0.114 (0.439) | 0.120 (0.534) | 0.064 (0.557) |
Average I/σ | 39.6 (4.3) | 47.0 (5.9) | 27.6 (4.35) | 30.2 (3.47) | 25.4 (2.8) |
Completeness (%) | 99.7 (100) | 100 (100) | 99.9 (99.4) | 99.9 (98.3) | 95.9 (98.3) |
Redundancy | 9.4 (9.4) | 21.3 (19.0) | 20.5 (14.3) | 20.3 (13.0) | 5.9 (5.4) |
Refinement resolution (Å) | 50 – 1.35 (1.37 – 1.35) | 50 – 1.55 (1.58–1.55) | 50 – 1.85 (1.92 – 1.85) | 50 – 1.90 (1.98 – 1.90) | 50 – 1.40 (1.42 – 1.40) |
Rcryst | 0.135 (0.211) | 0.141 (0.159) | 0.164 (0.177) | 0.178 (0.196) | 0.139 (0.207) |
Rfreea | 0.154 (0.245) | 0.171 (0.219) | 0.189 (0.202) | 0.217 (0.245) | 0.168 (0.277) |
No. of protein residues | 247 | 247 | 247 | 247 | 247 |
No. of protein atoms | 1933 | 1938 | 1931 | 1912 | 1929 |
No. of water molecules | 274 | 280 | 231 | 173 | 256 |
Average B-factor (Å2) | |||||
Protein | 14.1 | 15.8 | 16.8 | 26.8 | 14.2 |
Water | 25.0 | 27.5 | 24.4 | 30.4 | 24.9 |
Ligand | 12.2 | 15.7 | 22.1 | 23.3 | 11.7 |
Mg+2 | 7.7 | 9.7 | 11.8 | 15.8 | 7.6 |
rmsdb | |||||
Bonds (Å) | 0.006 | 0.005 | 0.006 | 0.006 | 0.005 |
Angles (deg) | 1.17 | 1.04 | 1.00 | 1.02 | 1.03 |
Ramachandran plotc | |||||
Favored (%) | 98.0 | 98.0 | 98.0 | 97.5 | 98.0 |
Allowed (%) | 2.0 | 2.0 | 2.0 | 2.5 | 2.0 |
Coordinate error (Å)d | 0.13 | 0.17 | 0.18 | 0.21 | 0.14 |
PDB code | 3OCU | 3OCV | 3OCW | 3OCX | 3OCY |
Values for the outer resolution shell of data are given in parenthesis.
A common set of test reflections (5 %) was used for refinement of all structures.
Compared to the parameters of Engh and Huber.37
The Ramachandran plot was generated with RAMPAGE.38
Maximum likelihood-based coordinate error estimate.