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. Author manuscript; available in PMC: 2011 Dec 10.
Published in final edited form as: J Mol Biol. 2010 Oct 8;404(4):639–649. doi: 10.1016/j.jmb.2010.09.065

Table 1.

Data collection and refinement statistics

NMN 5′-AMP 3′-AMP 2′-AMP phosphate
Beamline 24-ID-C 4.2.2 4.2.2 4.2.2 24-ID-C
Wavelength 0.9792 1.00 1.00 1.00 0.9792
Data collection resolution (Å) 50 – 1.35 (1.40 – 1.35) 50 – 1.55 (1.61–1.55) 50 – 1.85 (1.92 – 1.85) 50 – 1.90 (1.93 – 1.90) 50 – 1.40 (1.45 – 1.40)
No. of observations 622380 944628 536096 499757 340873
No. of unique reflections 66003 44418 26166 24575 57486
Rmerge(I) 0.074 (0.603) 0.088 (0.427) 0.114 (0.439) 0.120 (0.534) 0.064 (0.557)
Average I/σ 39.6 (4.3) 47.0 (5.9) 27.6 (4.35) 30.2 (3.47) 25.4 (2.8)
Completeness (%) 99.7 (100) 100 (100) 99.9 (99.4) 99.9 (98.3) 95.9 (98.3)
Redundancy 9.4 (9.4) 21.3 (19.0) 20.5 (14.3) 20.3 (13.0) 5.9 (5.4)
Refinement resolution (Å) 50 – 1.35 (1.37 – 1.35) 50 – 1.55 (1.58–1.55) 50 – 1.85 (1.92 – 1.85) 50 – 1.90 (1.98 – 1.90) 50 – 1.40 (1.42 – 1.40)
Rcryst 0.135 (0.211) 0.141 (0.159) 0.164 (0.177) 0.178 (0.196) 0.139 (0.207)
Rfreea 0.154 (0.245) 0.171 (0.219) 0.189 (0.202) 0.217 (0.245) 0.168 (0.277)
No. of protein residues 247 247 247 247 247
No. of protein atoms 1933 1938 1931 1912 1929
No. of water molecules 274 280 231 173 256
Average B-factor (Å2)
 Protein 14.1 15.8 16.8 26.8 14.2
 Water 25.0 27.5 24.4 30.4 24.9
 Ligand 12.2 15.7 22.1 23.3 11.7
 Mg+2 7.7 9.7 11.8 15.8 7.6
rmsdb
 Bonds (Å) 0.006 0.005 0.006 0.006 0.005
 Angles (deg) 1.17 1.04 1.00 1.02 1.03
Ramachandran plotc
 Favored (%) 98.0 98.0 98.0 97.5 98.0
 Allowed (%) 2.0 2.0 2.0 2.5 2.0
Coordinate error (Å)d 0.13 0.17 0.18 0.21 0.14
PDB code 3OCU 3OCV 3OCW 3OCX 3OCY

Values for the outer resolution shell of data are given in parenthesis.

a

A common set of test reflections (5 %) was used for refinement of all structures.

b

Compared to the parameters of Engh and Huber.37

c

The Ramachandran plot was generated with RAMPAGE.38

d

Maximum likelihood-based coordinate error estimate.